Multiplex protein imaging in tumour biology

N de Souza, S Zhao, B Bodenmiller - Nature Reviews Cancer, 2024 - nature.com
Tissue imaging has become much more colourful in the past decade. Advances in both
experimental and analytical methods now make it possible to image protein markers in …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Nano-DESI mass spectrometry imaging of proteoforms in biological tissues with high spatial resolution

M Yang, D Unsihuay, H Hu, F Nguele Meke… - Analytical …, 2023 - ACS Publications
Mass spectrometry imaging (MSI) is a powerful tool for label-free map** of the spatial
distribution of proteins in biological tissues. We have previously demonstrated imaging of …

Robust phenoty** of highly multiplexed tissue imaging data using pixel-level clustering

CC Liu, NF Greenwald, A Kong, EF McCaffrey… - Nature …, 2023 - nature.com
While technologies for multiplexed imaging have provided an unprecedented understanding
of tissue composition in health and disease, interpreting this data remains a significant …

Advances in mass spectrometry-based single cell analysis

S Lee, HM Vu, JH Lee, H Lim, MS Kim - Biology, 2023 - mdpi.com
Simple Summary Cell-to-cell variation exists within a population of the same cell type due to
stochastic gene and protein expression and environmental factors. Studying such cellular …

Current best practices for analysis of dendritic spine morphology and number in neurodevelopmental disorder research

BZ Li, A Sumera, SA Booker… - ACS Chemical …, 2023 - ACS Publications
Quantitative methods for assessing neural anatomy have rapidly evolved in neuroscience
and provide important insights into brain health and function. However, as new techniques …

Single-cell spatial proteomic imaging for human neuropathology

K Vijayaragavan, BJ Cannon, D Tebaykin… - Acta Neuropathologica …, 2022 - Springer
Neurodegenerative disorders are characterized by phenotypic changes and hallmark
proteopathies. Quantifying these in archival human brain tissues remains indispensable for …

Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF)

CC Liu, M Bosse, A Kong, A Kagel, R Kinders… - Laboratory …, 2022 - nature.com
Multiplexed ion beam imaging by time-of-flight (MIBI-TOF) is a form of mass spectrometry
imaging that uses metal labeled antibodies and secondary ion mass spectrometry to image …

Spaceanova: Spatial co-occurrence analysis of cell types in multiplex imaging data using point process and functional anova

S Seal, B Neelon, PM Angel, EC O'Quinn… - Journal of Proteome …, 2024 - ACS Publications
Multiplex imaging platforms have enabled the identification of the spatial organization of
different types of cells in complex tissue or the tumor microenvironment. Exploring the …

Computational methods for single-cell proteomics

SM Guldberg, TLH Okholm… - Annual review of …, 2023 - annualreviews.org
Advances in single-cell proteomics technologies have resulted in high-dimensional datasets
comprising millions of cells that are capable of answering key questions about biology and …