Research advances in the genomics and applications for molecular breeding of aquaculture animals

X You, X Shan, Q Shi - Aquaculture, 2020 - Elsevier
High-throughput sequencing technologies have been extensively applied to genetics and
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …

Decoding the fish genome opens a new era in important trait research and molecular breeding in China

Q Zhou, J Wang, J Li, Z Chen, N Wang, M Li… - Science China Life …, 2024 - Springer
Aquaculture represents the fastest-growing global food production sector, as it has become
an essential component of the global food supply. China has the world's largest aquaculture …

Genomic architecture of rapid parallel adaptation to fresh water in a wild fish

SB Zong, YL Li, JX Liu - Molecular biology and evolution, 2021 - academic.oup.com
Rapid adaptation to novel environments may drive changes in genomic regions through
natural selection. However, the genetic architecture underlying these adaptive changes is …

New algorithms for accurate and efficient de novo genome assembly from long DNA sequencing reads

L Gonzalez-Garcia… - Life Science …, 2023 - life-science-alliance.org
Building de novo genome assemblies for complex genomes is possible thanks to long-read
DNA sequencing technologies. However, maximizing the quality of assemblies based on …

Full-length transcriptomic analysis reveals osmoregulatory mechanisms in Coilia nasus eyes reared under hypotonic and hyperosmotic stress

J Gao, G Xu, P Xu - Science of the Total Environment, 2021 - Elsevier
In recent years, sea-level rise, caused by global warming, will trigger salinity changes. This
will threaten the survival of aquatic animals. Till now, the osmoregulatory mechanism of …

Phased chromosome-level genome provides insights into the molecular adaptation for migratory lifestyle and population diversity for Pacific saury, Cololabis saira

Y Liu, Y Luo, P Wang, W Li, H Tian, C Cao, Z Ye… - Communications …, 2024 - nature.com
Abstract The Pacific saury (Cololabis saira) is a pelagic fish commonly found in the North
Pacific Ocean. Its population diversity and migratory lifestyle have long captured global …

Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus)

S Liu, L Wang, R Wang, H Wang, A Li, C An, Z Meng… - Scientific Data, 2025 - nature.com
Abstract The Japanese anchovy (Engraulis japonicus), a finfish with the largest biomass of a
single species in the Yellow and East China Seas, plays an important pivotal role in …

[HTML][HTML] Gills full-length transcriptomic analysis of osmoregulatory adaptive responses to salinity stress in Coilia nasus

J Gao, G Xu, P Xu - Ecotoxicology and Environmental Safety, 2021 - Elsevier
Salinity changes will threaten the survival of aquatic animals. However, osmoregulatory
mechanism of Coilia nasus has not been explored. Oxford Nanopore Technologies (ONT) …

Whole-genome resequencing of three Coilia nasus population reveals genetic variations in genes related to immune, vision, migration, and osmoregulation

J Gao, G Xu, P Xu - BMC genomics, 2021 - Springer
Background Coilia nasus is an important anadromous fish, widely distributed in China,
Japan, and Korea. Based on morphological and ecological researches of C. nasus, two …

Mitochondrial DNA and microsatellite analyses reveal strong genetic differentiation between two types of estuarine tapertail anchovies (Coilia) in Yangtze River Basin …

Z Xuan, T Jiang, H Liu, X Chen, J Yang - Hydrobiologia, 2021 - Springer
The estuarine tapertail anchovy might comprise a “paired species” of Coilia nasus (which
has declined sharply) and Coilia brachygnathus (dominant in some lakes). It has previously …