Analysis of non-uniformly sampled spectra with multi-dimensional decomposition

VY Orekhov, VA Jaravine - Progress in nuclear magnetic resonance …, 2011 - Elsevier
Multidimensional NMR spectroscopy has been established as an indispensible tool for
studying structure, dynamics, and interactions of biopolymers. When used in the frame of a …

Automated structure determination from NMR spectra

P Güntert - European Biophysics Journal, 2009 - Springer
Automated methods for protein structure determination by NMR have increasingly gained
acceptance and are now widely used for the automated assignment of distance restraints …

Time-optimized protein NMR assignment with an integrative deep learning approach using AlphaFold and chemical shift prediction

P Klukowski, R Riek, P Güntert - Science Advances, 2023 - science.org
Chemical shift assignment is vital for nuclear magnetic resonance (NMR)–based studies of
protein structures, dynamics, and interactions, providing crucial atomic-level insight …

NMR structure determination for larger proteins using backbone-only data

S Raman, OF Lange, P Rossi, M Tyka, X Wang… - Science, 2010 - science.org
Conventional protein structure determination from nuclear magnetic resonance data relies
heavily on side-chain proton-to-proton distances. The necessary side-chain resonance …

A new algorithm for reliable and general NMR resonance assignment

E Schmidt, P Guntert - Journal of the American Chemical Society, 2012 - ACS Publications
The new FLYA automated resonance assignment algorithm determines NMR chemical shift
assignments on the basis of peak lists from any combination of multidimensional through …

Automated projection spectroscopy (APSY)

S Hiller, F Fiorito, K Wüthrich, G Wider - Proceedings of the National …, 2005 - pnas.org
This work presents the automated projection spectroscopy (APSY) method for the recording
of discrete sets of j projections from N-dimensional (N≥ 3) NMR experiments at operator …

Automated protein structure determination from NMR spectra

B López-Méndez, P Güntert - Journal of the American Chemical …, 2006 - ACS Publications
Fully automated structure determination of proteins in solution (FLYA) yields, without human
intervention, three-dimensional protein structures starting from a set of multidimensional …

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies

N Kobayashi, J Iwahara, S Koshiba… - Journal of biomolecular …, 2007 - Springer
The recent expansion of structural genomics has increased the demands for quick and
accurate protein structure determination by NMR spectroscopy. The conventional strategy …

Robotic cloning and protein production platform of the Northeast Structural Genomics Consortium

TB Acton, KC Gunsalus, R **ao, LC Ma, J Aramini… - Methods in …, 2005 - Elsevier
In this chapter we describe the core Protein Production Platform of the Northeast Structural
Genomics Consortium (NESG) and outline the strategies used for producing high-quality …

Hyperdimensional NMR spectroscopy with nonlinear sampling

VA Jaravine, AV Zhuravleva, P Permi… - Journal of the …, 2008 - ACS Publications
An approach is described for joint interleaved recording, real-time processing, and analysis
of NMR data sets. The method employs multidimensional decomposition to find common …