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Analysis of non-uniformly sampled spectra with multi-dimensional decomposition
VY Orekhov, VA Jaravine - Progress in nuclear magnetic resonance …, 2011 - Elsevier
Multidimensional NMR spectroscopy has been established as an indispensible tool for
studying structure, dynamics, and interactions of biopolymers. When used in the frame of a …
studying structure, dynamics, and interactions of biopolymers. When used in the frame of a …
Automated structure determination from NMR spectra
P Güntert - European Biophysics Journal, 2009 - Springer
Automated methods for protein structure determination by NMR have increasingly gained
acceptance and are now widely used for the automated assignment of distance restraints …
acceptance and are now widely used for the automated assignment of distance restraints …
Time-optimized protein NMR assignment with an integrative deep learning approach using AlphaFold and chemical shift prediction
Chemical shift assignment is vital for nuclear magnetic resonance (NMR)–based studies of
protein structures, dynamics, and interactions, providing crucial atomic-level insight …
protein structures, dynamics, and interactions, providing crucial atomic-level insight …
NMR structure determination for larger proteins using backbone-only data
Conventional protein structure determination from nuclear magnetic resonance data relies
heavily on side-chain proton-to-proton distances. The necessary side-chain resonance …
heavily on side-chain proton-to-proton distances. The necessary side-chain resonance …
A new algorithm for reliable and general NMR resonance assignment
E Schmidt, P Guntert - Journal of the American Chemical Society, 2012 - ACS Publications
The new FLYA automated resonance assignment algorithm determines NMR chemical shift
assignments on the basis of peak lists from any combination of multidimensional through …
assignments on the basis of peak lists from any combination of multidimensional through …
Automated projection spectroscopy (APSY)
S Hiller, F Fiorito, K Wüthrich, G Wider - Proceedings of the National …, 2005 - pnas.org
This work presents the automated projection spectroscopy (APSY) method for the recording
of discrete sets of j projections from N-dimensional (N≥ 3) NMR experiments at operator …
of discrete sets of j projections from N-dimensional (N≥ 3) NMR experiments at operator …
Automated protein structure determination from NMR spectra
B López-Méndez, P Güntert - Journal of the American Chemical …, 2006 - ACS Publications
Fully automated structure determination of proteins in solution (FLYA) yields, without human
intervention, three-dimensional protein structures starting from a set of multidimensional …
intervention, three-dimensional protein structures starting from a set of multidimensional …
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies
N Kobayashi, J Iwahara, S Koshiba… - Journal of biomolecular …, 2007 - Springer
The recent expansion of structural genomics has increased the demands for quick and
accurate protein structure determination by NMR spectroscopy. The conventional strategy …
accurate protein structure determination by NMR spectroscopy. The conventional strategy …
Robotic cloning and protein production platform of the Northeast Structural Genomics Consortium
In this chapter we describe the core Protein Production Platform of the Northeast Structural
Genomics Consortium (NESG) and outline the strategies used for producing high-quality …
Genomics Consortium (NESG) and outline the strategies used for producing high-quality …
Hyperdimensional NMR spectroscopy with nonlinear sampling
VA Jaravine, AV Zhuravleva, P Permi… - Journal of the …, 2008 - ACS Publications
An approach is described for joint interleaved recording, real-time processing, and analysis
of NMR data sets. The method employs multidimensional decomposition to find common …
of NMR data sets. The method employs multidimensional decomposition to find common …