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UniProt: the universal protein knowledgebase in 2023
Nucleic acids research, 2023 - academic.oup.com
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-
quality and freely accessible set of protein sequences annotated with functional information …
quality and freely accessible set of protein sequences annotated with functional information …
A survey on the algorithm and development of multiple sequence alignment
Multiple sequence alignment (MSA) is an essential cornerstone in bioinformatics, which can
reveal the potential information in biological sequences, such as function, evolution and …
reveal the potential information in biological sequences, such as function, evolution and …
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …
87 papers reporting on new databases and 85 updates from resources previously published …
CROST: a comprehensive repository of spatial transcriptomics
The development of spatial transcriptome sequencing technology has revolutionized our
comprehension of complex tissues and propelled life and health sciences into an era of …
comprehension of complex tissues and propelled life and health sciences into an era of …
[HTML][HTML] Methods in DNA methylation array dataset analysis: A review
Understanding the intricate relationships between gene expression levels and epigenetic
modifications in a genome is crucial to comprehending the pathogenic mechanisms of many …
modifications in a genome is crucial to comprehending the pathogenic mechanisms of many …
2022 updates to the rat genome database: a findable, accessible, interoperable, and reusable (FAIR) resource
M Vedi, JR Smith, G Thomas Hayman, M Tutaj… - Genetics, 2023 - academic.oup.com
Abstract The Rat Genome Database (RGD, https://rgd. mcw. edu) has evolved from simply a
resource for rat genetic markers, maps, and genes, by adding multiple genomic data types …
resource for rat genetic markers, maps, and genes, by adding multiple genomic data types …
Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque
Biomedical data is accumulating at a fast pace and integrating it into a unified framework is a
major challenge, so that multiple views of a given biological event can be considered …
major challenge, so that multiple views of a given biological event can be considered …
gutMDisorder v2. 0: a comprehensive database for dysbiosis of gut microbiota in phenotypes and interventions
C Qi, Y Cai, K Qian, X Li, J Ren, P Wang… - Nucleic acids …, 2023 - academic.oup.com
Gut microbiota plays a significant role in maintaining host health, and conversely, disorders
potentially lead to dysbiosis, an imbalance in the composition of the gut microbial …
potentially lead to dysbiosis, an imbalance in the composition of the gut microbial …
AGIDB: a versatile database for genotype imputation and variant decoding across species
The high cost of large-scale, high-coverage whole-genome sequencing has limited its
application in genomics and genetics research. The common approach has been to impute …
application in genomics and genetics research. The common approach has been to impute …
An ontology-based knowledge graph for representing interactions involving RNA molecules
The “RNA world” represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …
processes and human diseases and is paving the way for the development of new drugs …