The role of protein loops and linkers in conformational dynamics and allostery

E Papaleo, G Saladino, M Lambrughi… - Chemical …, 2016 - ACS Publications
Proteins are dynamic entities that undergo a plethora of conformational changes that may
take place on a wide range of time scales. These changes can be as small as the rotation of …

Starburst dendrimers: molecular‐level control of size, shape, surface chemistry, topology, and flexibility from atoms to macroscopic matter

DA Tomalia, AM Naylor… - … International Edition in …, 1990 - Wiley Online Library
Starburst dendrimers are three‐dimensional, highly ordered oligomeric and polymeric
compounds formed by reiterative reaction sequences starting from smaller molecules …

The Pfam protein families database: embracing AI/ML

T Paysan-Lafosse, A Andreeva, M Blum… - Nucleic acids …, 2025 - academic.oup.com
The Pfam protein families database is a comprehensive collection of protein domains and
families used for genome annotation and protein structure and function analysis …

Knowledge‐based protein secondary structure assignment

D Frishman, P Argos - Proteins: Structure, Function, and …, 1995 - Wiley Online Library
We have developed an automatic algorithm STRIDE for protein secondary structure
assignment from atomic coordinates based on the combined use of hydrogen bond energy …

A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins

C Murre, PS McCaw, D Baltimore - Cell, 1989 - cell.com
Two cDNAs were isolated whose dimerized products bind specifically to a DNA sequence,
KEY, located in the immunoglobulin kappa chain enhancer. Both cDNAs share a region of …

Amide modes and protein conformation

J Bandekar - Biochimica et Biophysica Acta (BBA)-Protein Structure …, 1992 - Elsevier
Infrared spectroscopy (IR) has played a pioneering role in studying the conformations of
peptides, polypeptides and proteins [l]. The advent of stable and powerful lasers led to the …

The TCP domain: a motif found in proteins regulating plant growth and development

P Cubas, N Lauter, J Doebley, E Coen - The Plant Journal, 1999 - Wiley Online Library
The cycloidea (cyc) and teosinte branched 1 (tb1) genes code for structurally related
proteins implicated in the evolution of key morphological traits. However, the biochemical …

Peptoids and polypeptoids at the frontier of supra-and macromolecular engineering

N Gangloff, J Ulbricht, T Lorson, H Schlaad… - Chemical …, 2016 - ACS Publications
In most general terms, polymers and their supramolecular assemblies have been defining
life on this planet since its conception. Polymers of nucleic acids carry the code of life and …

Crystal Structure of the Catalytic Domains of Adenylyl Cyclase in a Complex with G·GTPγS

JJG Tesmer, RK Sunahara, AG Gilman, SR Sprang - Science, 1997 - science.org
The crystal structure of a soluble, catalytically active form of adenylyl cyclase in a complex
with its stimulatory heterotrimeric G protein α subunit (Gs α) and forskolin was determined to …

Algorithms for the optimal identification of segment neighborhoods

IE Auger, CE Lawrence - Bulletin of mathematical biology, 1989 - Elsevier
Two algorithms for the efficient identification of segment neighborhoods are presented. A
segment neighborhood is a set of contiguous residues that share common features. Two …