Extracting abundance information from DNA‐based data

M Luo, Y Ji, D Warton, DW Yu - Molecular Ecology Resources, 2023 - Wiley Online Library
The accurate extraction of species‐abundance information from DNA‐based data
(metabarcoding, metagenomics) could contribute usefully to diet analysis and food‐web …

Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation

TJ Creedy, C Andújar… - Molecular Ecology …, 2022 - Wiley Online Library
Metabarcoding of DNA extracted from community samples of whole organisms (whole
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …

Monitoring insect pollinators and flower visitation: The effectiveness and feasibility of different survey methods

RS O'Connor, WE Kunin, MPD Garratt… - Methods in Ecology …, 2019 - Wiley Online Library
The status of pollinating insects is of international concern, but knowledge of the magnitude
and extent of declines is limited by a lack of systematic monitoring. Standardized protocols …

Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing

A Srivathsan, E Hartop, J Puniamoorthy, WT Lee… - BMC biology, 2019 - Springer
Background More than 80% of all animal species remain unknown to science. Most of these
species live in the tropics and belong to animal taxa that combine small body size with high …

Towards a US national program for monitoring native bees

SH Woodard, S Federman, RR James… - Biological …, 2020 - Elsevier
North America has more than 4000 bee species, yet we have little information on the health,
distribution, and population trends of most of these species. In the United States, what …

Pollinator monitoring more than pays for itself

TD Breeze, AP Bailey, KG Balcombe… - Journal of Applied …, 2021 - Wiley Online Library
Resilient pollination services depend on sufficient abundance of pollinating insects over
time. Currently, however, most knowledge about the status and trends of pollinators is based …

[HTML][HTML] Improving wild bee monitoring, sampling methods, and conservation

F Klaus, M Ayasse, A Classen, J Dauber… - Basic and Applied …, 2024 - Elsevier
Bees are the most important group of insect pollinators, but their populations are declining.
To gain a better understanding of wild bee responses to different stressors (eg land-use …

Bees in the trees: Diverse spring fauna in temperate forest edge canopies

KR Urban-Mead, P Muñiz, J Gillung, A Espinoza… - Forest Ecology and …, 2021 - Elsevier
Temperate hardwood deciduous forest is the dominant landcover in the Northeastern US,
yet its canopy is usually ignored as pollinator habitat due to the abundance of wind …

YOLO object detection models can locate and classify broad groups of flower-visiting arthropods in images

T Stark, V Ştefan, M Wurm, R Spanier, H Taubenböck… - Scientific reports, 2023 - nature.com
Develoment of image recognition AI algorithms for flower-visiting arthropods has the
potential to revolutionize the way we monitor pollinators. Ecologists need light-weight …

Interrogating 1000 insect genomes for NUMTs: A risk assessment for estimates of species richness

PDN Hebert, DG Bock, SWJ Prosser - PLoS One, 2023 - journals.plos.org
The nuclear genomes of most animal species include NUMTs, segments of the mitogenome
incorporated into their chromosomes. Although NUMT counts are known to vary greatly …