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Deep learning methods for molecular representation and property prediction
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …
predict molecular property through diversified models.•One, two, and three-dimensional …
A practical guide to machine-learning scoring for structure-based virtual screening
Abstract Structure-based virtual screening (SBVS) via docking has been used to discover
active molecules for a range of therapeutic targets. Chemical and protein data sets that …
active molecules for a range of therapeutic targets. Chemical and protein data sets that …
GNINA 1.0: molecular docking with deep learning
Molecular docking computationally predicts the conformation of a small molecule when
binding to a receptor. Scoring functions are a vital piece of any molecular docking pipeline …
binding to a receptor. Scoring functions are a vital piece of any molecular docking pipeline …
Artificial intelligence in the battle against coronavirus (COVID-19): a survey and future research directions
Artificial intelligence (AI) has been applied widely in our daily lives in a variety of ways with
numerous success stories. AI has also contributed to dealing with the coronavirus disease …
numerous success stories. AI has also contributed to dealing with the coronavirus disease …
Algebraic graph-assisted bidirectional transformers for molecular property prediction
The ability of molecular property prediction is of great significance to drug discovery, human
health, and environmental protection. Despite considerable efforts, quantitative prediction of …
health, and environmental protection. Despite considerable efforts, quantitative prediction of …
Deep learning in virtual screening: recent applications and developments
Drug discovery is a cost and time-intensive process that is often assisted by computational
methods, such as virtual screening, to speed up and guide the design of new compounds …
methods, such as virtual screening, to speed up and guide the design of new compounds …
COVID-19 and SARS-CoV-2. Modeling the present, looking at the future
E Estrada - Physics reports, 2020 - Elsevier
Abstract Since December 2019 the Severe Acute Respiratory Syndrome Coronavirus 2
(SARS-CoV-2) has produced an outbreak of pulmonary disease which has soon become a …
(SARS-CoV-2) has produced an outbreak of pulmonary disease which has soon become a …
Position: Topological deep learning is the new frontier for relational learning
Topological deep learning (TDL) is a rapidly evolving field that uses topological features to
understand and design deep learning models. This paper posits that TDL is the new frontier …
understand and design deep learning models. This paper posits that TDL is the new frontier …
Persistent spectral–based machine learning (PerSpect ML) for protein-ligand binding affinity prediction
Molecular descriptors are essential to not only quantitative structure-activity relationship
(QSAR) models but also machine learning–based material, chemical, and biological data …
(QSAR) models but also machine learning–based material, chemical, and biological data …
Topological feature engineering for machine learning based halide perovskite materials design
Accelerated materials development with machine learning (ML) assisted screening and high
throughput experimentation for new photovoltaic materials holds the key to addressing our …
throughput experimentation for new photovoltaic materials holds the key to addressing our …