The threat of programmed DNA damage to neuronal genome integrity and plasticity

KW Caldecott, ME Ward, A Nussenzweig - Nature Genetics, 2022 - nature.com
The neuronal genome is particularly sensitive to loss or attenuation of DNA repair, and many
neurological diseases ensue when DNA repair is impaired. It is well-established that the …

A single-cell atlas of chromatin accessibility in the human genome

K Zhang, JD Hocker, M Miller, X Hou, J Chiou… - Cell, 2021 - cell.com
Current catalogs of regulatory sequences in the human genome are still incomplete and lack
cell type resolution. To profile the activity of gene regulatory elements in diverse cell types …

Towards understanding sex differences in autism spectrum disorders

KQ Leow, MA Tonta, J Lu, HA Coleman, HC Parkington - Brain Research, 2024 - Elsevier
Abstract Autism Spectrum Disorder (ASD) is a neurodevelopmental condition characterized
by social deficits, repetitive behaviours and lack of empathy. Its significant genetic heritability …

Functional characterization of Alzheimer's disease genetic variants in microglia

X Yang, J Wen, H Yang, IR Jones, X Zhu, W Liu, B Li… - Nature …, 2023 - nature.com
Candidate cis-regulatory elements (cCREs) in microglia demonstrate the most substantial
enrichment for Alzheimer's disease (AD) heritability compared to other brain cell types …

Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer's and Parkinson's diseases

MR Corces, A Shcherbina, S Kundu, MJ Gloudemans… - Nature …, 2020 - nature.com
Genome-wide association studies of neurological diseases have identified thousands of
variants associated with disease phenotypes. However, most of these variants do not alter …

Massively parallel characterization of regulatory elements in the develo** human cortex

C Deng, S Whalen, M Steyert, R Ziffra, PF Przytycki… - Science, 2024 - science.org
Nucleotide changes in gene regulatory elements are important determinants of neuronal
development and diseases. Using massively parallel reporter assays in primary human cells …

Three-dimensional genome rewiring in loci with human accelerated regions

KC Keough, S Whalen, F Inoue, PF Przytycki, T Fair… - Science, 2023 - science.org
Human accelerated regions (HARs) are conserved genomic loci that evolved at an
accelerated rate in the human lineage and may underlie human-specific traits. We …

Neuronal enhancers are hotspots for DNA single-strand break repair

W Wu, SE Hill, WJ Nathan, J Paiano, E Callen, D Wang… - Nature, 2021 - nature.com
Defects in DNA repair frequently lead to neurodevelopmental and neurodegenerative
diseases, underscoring the particular importance of DNA repair in long-lived post-mitotic …

Single-cell genomics and regulatory networks for 388 human brains

PS Emani, JJ Liu, D Clarke, M Jensen, J Warrell… - Science, 2024 - science.org
Single-cell genomics is a powerful tool for studying heterogeneous tissues such as the
brain. Yet little is understood about how genetic variants influence cell-level gene …

[HTML][HTML] 3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis

X Luo, Y Liu, D Dang, T Hu, Y Hou, X Meng, F Zhang… - Cell, 2021 - cell.com
Elucidating the regulatory mechanisms of human brain evolution is essential to
understanding human cognition and mental disorders. We generated multi-omics profiles …