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Enumerating soil biodiversity
Soil is an immense habitat for diverse organisms across the tree of life, but just how many
organisms live in soil is surprisingly unknown. Previous efforts to enumerate soil biodiversity …
organisms live in soil is surprisingly unknown. Previous efforts to enumerate soil biodiversity …
[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology
H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
Shifting microbial communities can enhance tree tolerance to changing climates
CM Allsup, I George, RA Lankau - Science, 2023 - science.org
Climate change is pushing species outside of their evolved tolerances. Plant populations
must acclimate, adapt, or migrate to avoid extinction. However, because plants associate …
must acclimate, adapt, or migrate to avoid extinction. However, because plants associate …
Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe
T Netherway, J Bengtsson, F Buegger… - Nature …, 2024 - nature.com
Trees interact with a multitude of microbes through their roots and root symbionts such as
mycorrhizal fungi and root endophytes. Here, we explore the role of fungal root symbionts as …
mycorrhizal fungi and root endophytes. Here, we explore the role of fungal root symbionts as …
Towards exhaustive community ecology via DNA metabarcoding
Exhaustive biodiversity data, covering all the taxa in an environment, would be fundamental
to understand how global changes influence organisms living at different trophic levels, and …
to understand how global changes influence organisms living at different trophic levels, and …
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
Fungal community composition predicts forest carbon storage at a continental scale
Forest soils harbor hyper-diverse microbial communities which fundamentally regulate
carbon and nutrient cycling across the globe. Directly testing hypotheses on how …
carbon and nutrient cycling across the globe. Directly testing hypotheses on how …
Environmental DNA/RNA for pathogen and parasite detection, surveillance, and ecology
Detection of pathogens, parasites, and other symbionts in environmental samples via
eDNA/eRNA (collectively eNA) is an increasingly important source of information about their …
eDNA/eRNA (collectively eNA) is an increasingly important source of information about their …
Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: Extremophily and adaptation
Fungi are ubiquitous and important biosphere inhabitants, and their abilities to decompose,
degrade, and otherwise transform a massive range of organic and inorganic substances …
degrade, and otherwise transform a massive range of organic and inorganic substances …
Environmental DNA metabarcoding read numbers and their variability predict species abundance, but weakly in non‐dominant species
Metabarcoding of environmental DNA (eDNA) provides more comprehensive, efficient, and
non‐invasive sampling of biological communities than conventional methods. However …
non‐invasive sampling of biological communities than conventional methods. However …