Harnessing deep learning for population genetic inference
In population genetics, the emergence of large-scale genomic data for various species and
populations has provided new opportunities to understand the evolutionary forces that drive …
populations has provided new opportunities to understand the evolutionary forces that drive …
An overview of deep generative models in functional and evolutionary genomics
Following the widespread use of deep learning for genomics, deep generative modeling is
also becoming a viable methodology for the broad field. Deep generative models (DGMs) …
also becoming a viable methodology for the broad field. Deep generative models (DGMs) …
Adversarial learning for feature shift detection and correction
Data shift is a phenomenon present in many real-world applications, and while there are
multiple methods attempting to detect shifts, the task of localizing and correcting the features …
multiple methods attempting to detect shifts, the task of localizing and correcting the features …
SALAI-Net: species-agnostic local ancestry inference network
Motivation Local ancestry inference (LAI) is the high resolution prediction of ancestry labels
along a DNA sequence. LAI is important in the study of human history and migrations, and it …
along a DNA sequence. LAI is important in the study of human history and migrations, and it …
Deep convolutional and conditional neural networks for large-scale genomic data generation
Applications of generative models for genomic data have gained significant momentum in
the past few years, with scopes ranging from data characterization to generation of genomic …
the past few years, with scopes ranging from data characterization to generation of genomic …
Deep variational autoencoders for population genetics
Motivation Modern biobanks provide numerous high-resolution genomic sequences of
diverse populations. These datasets enable a better understanding of genotype-phenotype …
diverse populations. These datasets enable a better understanding of genotype-phenotype …
Towards creating longer genetic sequences with GANs: Generation in principal component space
Synthetic data generation via generative modeling has recently become a prominent
research field in genomics, with applications ranging from functional sequence design to …
research field in genomics, with applications ranging from functional sequence design to …
Adversarial attacks on genotype sequences
Adversarial attacks can drastically change the output of a method by small alterations to its
input. While this can be a useful framework to analyze worst-case robustness, it can also be …
input. While this can be a useful framework to analyze worst-case robustness, it can also be …
Generating Synthetic Genotypes using Diffusion Models
In this paper, we introduce the first diffusion model designed to generate complete synthetic
human genotypes, which, by standard protocols, one can straightforwardly expand into full …
human genotypes, which, by standard protocols, one can straightforwardly expand into full …
Genomic Databases Homogenization with Machine Learning
Large-scale and increasingly diverse datasets power modern genomic studies, yet robust
data integration and homogenization across varying sources remains a challenge. The …
data integration and homogenization across varying sources remains a challenge. The …