[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
Sequence of the sugar pine megagenome
Until very recently, complete characterization of the megagenomes of conifers has remained
elusive. The diploid genome of sugar pine (Pinus lambertiana Dougl.) has a highly …
elusive. The diploid genome of sugar pine (Pinus lambertiana Dougl.) has a highly …
Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes
Spruces (Picea spp.) are coniferous trees widespread in boreal and mountainous forests of
the northern hemisphere, with large economic significance and enormous contributions to …
the northern hemisphere, with large economic significance and enormous contributions to …
The Douglas-fir genome sequence reveals specialization of the photosynthetic apparatus in Pinaceae
DB Neale, PE McGuire, NC Wheeler… - G3: Genes …, 2017 - academic.oup.com
A reference genome sequence for Pseudotsuga menziesii var. menziesii (Mirb.) Franco
(Coastal Douglas-fir) is reported, thus providing a reference sequence for a third genus of …
(Coastal Douglas-fir) is reported, thus providing a reference sequence for a third genus of …
Evolution of protein domain architectures
This chapter reviews current research on how protein domain architectures evolve. We
begin by summarizing work on the phylogenetic distribution of proteins, as this will directly …
begin by summarizing work on the phylogenetic distribution of proteins, as this will directly …
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Background Ambitious initiatives to coordinate genome sequencing of Earth's biodiversity
mean that the accumulation of genomic data is growing rapidly. In addition to cataloguing …
mean that the accumulation of genomic data is growing rapidly. In addition to cataloguing …
A draft genome assembly of the solar-powered sea slug Elysia chlorotica
Elysia chlorotica, a sacoglossan sea slug found off the East Coast of the United States, is
well-known for its ability to sequester chloroplasts from its algal prey and survive by …
well-known for its ability to sequester chloroplasts from its algal prey and survive by …
Global expression pattern of genes containing positively selected sites in European anchovy (Engraulis encrasicolus L.) may shed light on teleost reproduction
European anchovy is a multiple-spawning and highly fecundate pelagic fish with high
economic and ecological significance. Although fecundity is influenced by nutrition …
economic and ecological significance. Although fecundity is influenced by nutrition …
Comprehensive Stress‐Based De Novo Transcriptome Assembly and Annotation of Guar (Cyamopsis tetragonoloba (L.) Taub.): An Important Industrial and Forage …
F Al-Qurainy, A Alshameri, AR Gaafar… - … journal of genomics, 2019 - Wiley Online Library
The forage crop Guar (Cyamopsis tetragonoloba (L.) Taub.) has the ability to endure heat,
drought, and mild salinity. A complete image on its genic architecture will promote our …
drought, and mild salinity. A complete image on its genic architecture will promote our …
The modular nature of protein evolution: domain rearrangement rates across eukaryotic life
Background Modularity is important for evolutionary innovation. The recombination of
existing units to form larger complexes with new functionalities spares the need to create …
existing units to form larger complexes with new functionalities spares the need to create …