Bio-ontologies: current trends and future directions

O Bodenreider, R Stevens - Briefings in bioinformatics, 2006 - academic.oup.com
In recent years, as a knowledge-based discipline, bioinformatics has been made more
computationally amenable. After its beginnings as a technology advocated by computer …

Literature mining, ontologies and information visualization for drug repurposing

C Andronis, A Sharma, V Virvilis… - Briefings in …, 2011 - academic.oup.com
The immense growth of MEDLINE coupled with the realization that a vast amount of
biomedical knowledge is recorded in free-text format, has led to the appearance of a large …

OWL 2: The next step for OWL

BC Grau, I Horrocks, B Motik, B Parsia… - Journal of Web …, 2008 - Elsevier
Since achieving W3C recommendation status in 2004, the Web Ontology Language (OWL)
has been successfully applied to many problems in computer science. Practical experience …

Ontology design patterns

A Gangemi, V Presutti - Handbook on ontologies, 2009 - Springer
Computational ontologies in the context of information systems are artifacts that encode a
description of some world, for some purpose. Under the assumption that there exist classes …

Formal modeling and analysis of an audio/video protocol: An industrial case study using UPPAAL

K Havelund, A Skou, KG Larsen… - Proceedings Real-Time …, 1997 - ieeexplore.ieee.org
A formal and automatic verification of a real-life protocol is presented. The protocol, about
2800 lines of assembler code, has been used in products from the audio/video company …

The complexity of circumscription in DLs

PA Bonatti, C Lutz, F Wolter - Journal of Artificial Intelligence Research, 2009 - jair.org
As fragments of first-order logic, Description logics (DLs) do not provide nonmonotonic
features such as defeasible inheritance and default rules. Since many applications would …

[HTML][HTML] A new semantics for overriding in description logics

PA Bonatti, M Faella, IM Petrova, L Sauro - Artificial Intelligence, 2015 - Elsevier
Many modern applications of description logics (DLs, for short), such as biomedical
ontologies and semantic web policies, provide fresh motivations for extending DLs with …

Deep hiearchical multi-label classification applied to chest X-ray abnormality taxonomies

H Chen, S Miao, D Xu, GD Hager, AP Harrison - Medical image analysis, 2020 - Elsevier
Chest X-rays (CXRs) are a crucial and extraordinarily common diagnostic tool, leading to
heavy research for computer-aided diagnosis (CAD) solutions. However, both high …

Experimenting with extreme design

E Blomqvist, V Presutti, E Daga, A Gangemi - International Conference on …, 2010 - Springer
Abstract Ontology Design Patterns (ODPs) support reusability and use of best practices in
ontology engineering. Previous studies have shown that Content ODPs, in particular, have …

[HTML][HTML] Rational closure for all description logics

PA Bonatti - Artificial Intelligence, 2019 - Elsevier
Rational closure is one of the most extensively studied nonmonotonic extensions of
description logics. Nonetheless, so far it has been investigated only for description logics …