Human topoisomerases and their roles in genome stability and organization

Y Pommier, A Nussenzweig, S Takeda… - … Reviews Molecular Cell …, 2022 - nature.com
Human topoisomerases comprise a family of six enzymes: two type IB (TOP1 and
mitochondrial TOP1 (TOP1MT), two type IIA (TOP2A and TOP2B) and two type IA (TOP3A …

Variation of structure and cellular functions of Type IA topoisomerases across the tree of life

K Tan, YC Tse-Dinh - Cells, 2024 - mdpi.com
Topoisomerases regulate the topological state of cellular genomes to prevent impediments
to vital cellular processes, including replication and transcription from suboptimal …

Structural insights into human topoisomerase 3β DNA and RNA catalysis and nucleic acid gate dynamics

X Yang, X Chen, W Yang, Y Pommier - Nature Communications, 2025 - nature.com
Type IA topoisomerases (TopoIAs) are present in all living organisms. They resolve
DNA/RNA catenanes, knots and supercoils by breaking and rejoining single-stranded …

[HTML][HTML] Resolution of R-loops by topoisomerase III-β (TOP3B) in coordination with the DEAD-box helicase DDX5

S Saha, X Yang, SN Huang, K Agama, SA Baechler… - Cell reports, 2022 - cell.com
The present study demonstrates how TOP3B is involved in resolving R-loops. We observed
elevated R-loops in TOP3B knockout cells (TOP3BKO), which are suppressed by TOP3B …

Isolation and detection of DNA–protein crosslinks in mammalian cells

I Torrecilla, A Ruggiano, K Kiianitsa… - Nucleic Acids …, 2024 - academic.oup.com
DNA–protein crosslinks (DPCs) are toxic DNA lesions wherein a protein is covalently
attached to DNA. If not rapidly repaired, DPCs create obstacles that disturb DNA replication …

Replication-associated formation and repair of human topoisomerase IIIα cleavage complexes

LK Saha, S Saha, X Yang, SN Huang, Y Sun… - Nature …, 2023 - nature.com
Abstract Topoisomerase IIIα (TOP3A) belongs to the conserved Type IA family of DNA
topoisomerases. Here we report that human TOP3A is associated with DNA replication forks …

The TDRD3-USP9X complex and MIB1 regulate TOP3B homeostasis and prevent deleterious TOP3B cleavage complexes

S Saha, SN Huang, X Yang, LK Saha, Y Sun… - Nature …, 2023 - nature.com
TOP3B is stabilized by TDRD3. Hypothesizing that TDRD3 recruits a deubiquitinase, we find
that TOP3B interacts with USP9X via TDRD3. Inactivation of USP9X destabilizes TOP3B …

Real-time imaging of drug-induced trap** of cellular topoisomerases and poly (ADP-ribose) polymerase 1 at the single-molecule level

Y Sun, J Chen, Y Pommier - Nucleic Acids Research, 2023 - academic.oup.com
Abstract Topoisomerases (TOP1, TOP2α, and β) are nuclear enzymes crucial for virtually all
aspects of DNA metabolisms. They also are the targets of important anti-tumor …

R-loops, type I topoisomerases and cancer

S Saha, Y Pommier - NAR cancer, 2023 - academic.oup.com
R-loops are abundant and dynamic structures ubiquitously present in human cells both in
the nuclear and mitochondrial genomes. They form in cis in the wake of transcription …

Flap endonuclease 1 repairs DNA-protein cross-links via ADP-ribosylation–dependent mechanisms

Y Sun, LM Jenkins, LH El Touny, L Zhu, X Yang… - Science …, 2025 - science.org
DNA-protein cross-links (DPCs) are among the most detrimental genomic lesions. They are
ubiquitously produced by formaldehyde (FA), and failure to repair FA-induced DPCs blocks …