Addressing variability in iPSC-derived models of human disease: guidelines to promote reproducibility

V Volpato, C Webber - Disease models & mechanisms, 2020 - journals.biologists.com
Induced pluripotent stem cell (iPSC) technologies have provided in vitro models of
inaccessible human cell types, yielding new insights into disease mechanisms especially for …

Single-cell transcriptomics meets lineage tracing

L Kester, A Van Oudenaarden - Cell stem cell, 2018 - cell.com
Reconstructing lineage relationships between cells within a tissue or organism is a long-
standing aim in biology. Traditionally, lineage tracing has been achieved through the …

[HTML][HTML] An epigenetic barrier sets the timing of human neuronal maturation

G Ciceri, A Baggiolini, HS Cho, M Kshirsagar… - Nature, 2024 - nature.com
The pace of human brain development is highly protracted compared with most other
species,,,,,–. The maturation of cortical neurons is particularly slow, taking months to years to …
AB Rosenberg, CM Roco, RA Muscat, A Kuchina… - Science, 2018 - science.org
To facilitate scalable profiling of single cells, we developed split-pool ligation-based
transcriptome sequencing (SPLiT-seq), a single-cell RNA-seq (scRNA-seq) method that …
Lagre Referanse Sitert av 1316 BA Biddy, W Kong, K Kamimoto, C Guo, SE Waye… - Nature, 2018 - nature.com
Direct lineage reprogramming involves the conversion of cellular identity. Single-cell
technologies are useful for deconstructing the considerable heterogeneity that emerges …

Functional modules of the proteostasis network

GG Jayaraj, MS Hipp, FU Hartl - Cold Spring Harbor …, 2020 - cshperspectives.cshlp.org
Cells invest in an extensive network of factors to maintain protein homeostasis (proteostasis)
and prevent the accumulation of potentially toxic protein aggregates. This proteostasis …

CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information

SW Wang, MJ Herriges, K Hurley, DN Kotton… - Nature …, 2022 - nature.com
A goal of single-cell genome-wide profiling is to reconstruct dynamic transitions during cell
differentiation, disease onset and drug response. Single-cell assays have recently been …

Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells

D Rosebrock, S Arora, N Mutukula, R Volkman… - Nature cell …, 2022 - nature.com
Cerebral organoids exhibit broad regional heterogeneity accompanied by limited cortical
cellular diversity despite the tremendous upsurge in derivation methods, suggesting …

Concepts and limitations for learning developmental trajectories from single cell genomics

S Tritschler, M Büttner, DS Fischer, M Lange… - …, 2019 - journals.biologists.com
Single cell genomics has become a popular approach to uncover the cellular heterogeneity
of progenitor and terminally differentiated cell types with great precision. This approach can …