Insect mitochondrial genomics: implications for evolution and phylogeny
SL Cameron - Annual review of entomology, 2014 - annualreviews.org
The mitochondrial (mt) genome is, to date, the most extensively studied genomic system in
insects, outnumbering nuclear genomes tenfold and representing all orders versus very few …
insects, outnumbering nuclear genomes tenfold and representing all orders versus very few …
Is serotonin an upper or a downer? The evolution of the serotonergic system and its role in depression and the antidepressant response
The role of serotonin in depression and antidepressant treatment remains unresolved
despite decades of research. In this paper, we make three major claims. First, serotonin …
despite decades of research. In this paper, we make three major claims. First, serotonin …
Strand-preferred base editing of organellar and nuclear genomes using CyDENT
Transcription-activator-like effector (TALE)-based tools for base editing of nuclear and
organellar DNA rely on double-stranded DNA deaminases, which edit substrate bases on …
organellar DNA rely on double-stranded DNA deaminases, which edit substrate bases on …
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from
whole genome sequencing data. It recruits organelle-associated reads using a modified …
whole genome sequencing data. It recruits organelle-associated reads using a modified …
[LIBRO][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
Chloroplot: an online program for the versatile plotting of organelle genomes
Understanding the complexity of genomic structures and their unique architecture is linked
with the power of visualization tools used to represent these features. Such tools should be …
with the power of visualization tools used to represent these features. Such tools should be …
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline
W Iwasaki, T Fukunaga, R Isagozawa… - Molecular biology …, 2013 - academic.oup.com
Mitofish is a database of fish mitochondrial genomes (mitogenomes) that includes powerful
and precise de novo annotations for mitogenome sequences. Fish occupy an important …
and precise de novo annotations for mitogenome sequences. Fish occupy an important …
Automatic annotation of organellar genomes with DOGMA
The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar
(plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that …
(plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that …
Structure and variation of the mitochondrial genome of fishes
Background The mitochondrial (mt) genome has been used as an effective tool for
phylogenetic and population genetic analyses in vertebrates. However, the structure and …
phylogenetic and population genetic analyses in vertebrates. However, the structure and …
Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species
Q Li, Y Luo, A Sha, W **ao, Z **ong, X Chen… - Frontiers in …, 2023 - frontiersin.org
Introduction Codon basis is a common and complex natural phenomenon observed in many
kinds of organisms. Methods In the present study, we analyzed the base bias of 12 …
kinds of organisms. Methods In the present study, we analyzed the base bias of 12 …