Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Madagascar's extraordinary biodiversity: Evolution, distribution, and use

A Antonelli, RJ Smith, AL Perrigo, A Crottini, J Hackel… - Science, 2022 - science.org
Madagascar's biota is hyperdiverse and includes exceptional levels of endemicity. We
review the current state of knowledge on Madagascar's past and current terrestrial and …

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

K Abarenkov, RH Nilsson, KH Larsson… - Nucleic Acids …, 2024 - academic.oup.com
Abstract UNITE (https://unite. ut. ee) is a web-based database and sequence management
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …

The microplastisphere: Biodegradable microplastics addition alters soil microbial community structure and function

J Zhou, H Gui, CC Banfield, Y Wen, H Zang… - Soil Biology and …, 2021 - Elsevier
Plastics accumulating in the environment, especially microplastics (defined as particles< 5
mm), can lead to a range of problems and potential loss of ecosystem services …

Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation

P Yu, X He, M Baer, S Beirinckx, T Tian, YAT Moya… - Nature plants, 2021 - nature.com
Beneficial interactions between plant roots and rhizosphere microorganisms are pivotal for
plant fitness. Nevertheless, the molecular mechanisms controlling the feedback between …

[HTML][HTML] Fungal mycobiome drives IL-33 secretion and type 2 immunity in pancreatic cancer

A Alam, E Levanduski, P Denz, HS Villavicencio… - Cancer cell, 2022 - cell.com
TH 2 cells and innate lymphoid cells 2 (ILC2) can stimulate tumor growth by secreting pro-
tumorigenic cytokines such as interleukin-4 (IL-4), IL-5, and IL-13. However, the …

Acidification suppresses the natural capacity of soil microbiome to fight pathogenic Fusarium infections

X Li, D Chen, VJ Carrión, D Revillini, S Yin… - Nature …, 2023 - nature.com
Soil-borne pathogens pose a major threat to food production worldwide, particularly under
global change and with growing populations. Yet, we still know very little about how the soil …

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

S Põlme, K Abarenkov, R Henrik Nilsson, BD Lindahl… - Fungal diversity, 2020 - Springer
The cryptic lifestyle of most fungi necessitates molecular identification of the guild in
environmental studies. Over the past decades, rapid development and affordability of …

Tree islands enhance biodiversity and functioning in oil palm landscapes

DC Zemp, N Guerrero-Ramirez, F Brambach, K Darras… - Nature, 2023 - nature.com
Abstract In the United Nations Decade on Ecosystem Restoration, large knowledge gaps
persist on how to increase biodiversity and ecosystem functioning in cash crop-dominated …

Global ecosystem thresholds driven by aridity

M Berdugo, M Delgado-Baquerizo, S Soliveres… - Science, 2020 - science.org
Aridity, which is increasing worldwide because of climate change, affects the structure and
functioning of dryland ecosystems. Whether aridification leads to gradual (versus abrupt) …