Computational modeling of heterogeneity and function of CD4+ T cells

A Carbo, R Hontecillas, T Andrew, K Eden… - Frontiers in cell and …, 2014 - frontiersin.org
The immune system is composed of many different cell types and hundreds of intersecting
molecular pathways and signals. This large biological complexity requires coordination …

[HTML][HTML] Agent-based model: a surging tool to simulate infectious diseases in the immune system

ZZ Shi, CH Wu, D Ben-Arieh - Open Journal of Modelling and Simulation, 2014 - scirp.org
Agent-based models (ABMs) are capable of constructing individual system components at
different levels of representation to describe non-linear relationships between those …

Immunity Agent-Based Model (IABM) for epidemiological systems

MN Gonzaga, MM de Oliveira, APF Atman - Chaos, Solitons & Fractals, 2023 - Elsevier
COVID-19 was one of the pandemic episodes that has afflicted humanity in the last centuries
and may not be the last. In science, the intense spread of the SARS-CoV-2 virus boosted the …

Multiscale modeling of mucosal immune responses

Y Mei, V Abedi, A Carbo, X Zhang, P Lu, C Philipson… - BMC …, 2015 - Springer
Computational modeling techniques are playing increasingly important roles in advancing a
systems-level mechanistic understanding of biological processes. Computer simulations …

Review of the systems biology of the immune system using agent‐based models

SB Shinde, MP Kurhekar - IET Systems Biology, 2018 - Wiley Online Library
The immune system is an inherent protection system in vertebrate animals including human
beings that exhibit properties such as self‐organisation, self‐adaptation, learning, and …

Modeling-enabled systems nutritional immunology

M Verma, R Hontecillas, V Abedi, A Leber… - Frontiers in …, 2016 - frontiersin.org
This review highlights the fundamental role of nutrition in the maintenance of health, the
immune response, and disease prevention. Emerging global mechanistic insights in the field …

Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-Based Model of Immune Responses to Helicobacter pylori Infection

M Alam, X Deng, C Philipson, J Bassaganya-Riera… - PLoS …, 2015 - journals.plos.org
Agent-based models (ABM) are widely used to study immune systems, providing a
procedural and interactive view of the underlying system. The interaction of components and …

Multiscale modeling: Concepts, technologies, and use cases in immunology

V Abedi, R Hontecillas, A Carbo, C Philipson… - Computational …, 2016 - Elsevier
Abstract In today's Big Data era, computing tools and techniques help revolutionize
immunological research in a meaningful way that is also shifting paradigm from top-down or …

Supervised learning methods in modeling of CD4+ T cell heterogeneity

P Lu, V Abedi, Y Mei, R Hontecillas, S Hoops, A Carbo… - BioData mining, 2015 - Springer
Background Modeling of the immune system–a highly non-linear and complex system–
requires practical and efficient data analytic approaches. The immune system is composed …

ENISI MSM: a novel multi-scale modeling platform for computational immunology

Y Mei, A Carbo, R Hontecillas, S Hoops… - 2014 IEEE …, 2014 - ieeexplore.ieee.org
Biological systems span several orders of magnitude in space and time from intracellular
pathways to tissue-level processes. Many studies focus on molecular level events while …