Intracellular organization is a key factor in cell metabolism. Cells have evolved various
organizational systems to solve the challenges of toxic pathway intermediates, competing …

Immunoinformatics is a new critical field with several tools and databases that conduct the
eyesight of experimental selection and facilitate analysis of the great amount of immunologic …

Pretrained language models have shown promise in analysing nucleotide sequences, yet a
versatile model excelling across diverse tasks with a single pretrained weight set remains …

Non-coding RNA structure and function are essential to understanding various biological
processes, such as cell signaling, gene expression, and post-transcriptional regulations …

RNA plays a pivotal role in translating genetic instructions into functional outcomes,
underscoring its importance in biological processes and disease mechanisms. Despite the …

For many RNA molecules, the secondary structure is essential for the correct function of the
RNA. Predicting RNA secondary structure from nucleotide sequences is a long-standing …

Background Secondary structure forms an important intermediate level of description of
nucleic acids that encapsulates the dominating part of the folding energy, is often well …

ABSTRACT The Nearest Neighbor Database (NNDB, http://rna. urmc. rochester. edu/NNDB)
is a web-based resource for disseminating parameter sets for predicting nucleic acid …

The Kinefold web server provides a web interface for stochastic folding simulations of
nucleic acids on second to minute molecular time scales. Renaturation or co-transcriptional …

The design of DNA and RNA sequences is critical for many endeavors, from DNA
nanotechnology, to PCR‐based applications, to DNA hybridization arrays. Results in the …