High-throughput plant phenoty**: a role for metabolomics?

RD Hall, JC D'Auria, ACS Ferreira, Y Gibon… - Trends in Plant …, 2022 - cell.com
High-throughput (HTP) plant phenoty** approaches are develo** rapidly and are
already hel** to bridge the genotype–phenotype gap. However, technologies should be …

[HTML][HTML] Advances in flux balance analysis by integrating machine learning and mechanism-based models

A Sahu, MA Blätke, JJ Szymański, N Töpfer - Computational and structural …, 2021 - Elsevier
The availability of multi-omics data sets and genome-scale metabolic models for various
organisms provide a platform for modeling and analyzing genotype-to-phenotype …

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants …

SMD Seaver, F Liu, Q Zhang, J Jeffryes… - Nucleic acids …, 2021 - academic.oup.com
For over 10 years, ModelSEED has been a primary resource for the construction of draft
genome-scale metabolic models based on annotated microbial or plant genomes. Now …

A new era in plant functional genomics

A Rai, M Yamazaki, K Saito - Current Opinion in Systems Biology, 2019 - Elsevier
In the last few years, research in plant sciences has seen an unprecedented growth of high
dimensional omics data sets and its application in functional genomics studies. These …

Mass spectrometry‐based forest tree metabolomics

AM Rodrigues, C Miguel, I Chaves… - Mass spectrometry …, 2021 - Wiley Online Library
Research in forest tree species has advanced slowly when compared with other agricultural
crops and model organisms, mainly due to the long‐life cycles, large genome sizes, and …

Promoting human nutrition and health through plant metabolomics: Current status and challenges

W Sun, Z Chen, J Hong, J Shi - Biology, 2020 - mdpi.com
Simple Summary This review summarizes the status, applications, and challenges of plant
metabolomics in the context of crop breeding, food quality and safety, and human nutrition …

Selection of appropriate post-harvest processing methods based on the metabolomics analysis of Salvia miltiorrhiza Bunge

S Qiu, Y Tu, D Huang, Z Dong, M Huang… - Food Research …, 2021 - Elsevier
Post-harvest processing is a leading cause of metabolic changes and quality loss in food
products. An untargeted metabolomics approach based on UHPLC-QTOF-MS was …

Genome-scale modeling of the primary-specialized metabolism interface

K Beilsmith, CS Henry, SMD Seaver - Current Opinion in Plant Biology, 2022 - Elsevier
Environmental challenges and development require plants to reallocate resources between
primary and specialized metabolites to survive. Genome-scale metabolic models, which …

Environment-coupled models of leaf metabolism

N Töpfer - Biochemical Society Transactions, 2021 - portlandpress.com
The plant leaf is the main site of photosynthesis. This process converts light energy and
inorganic nutrients into chemical energy and organic building blocks for the biosynthesis …

The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and …

S Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria… - bioRxiv, 2020 - biorxiv.org
Introduction For over ten years, the ModelSEED has been a primary resource for
researchers endeavoring to construct draft genome-scale metabolic models based on …