Complex correlations: replication timing and mutational landscapes during cancer and genome evolution

J Sima, DM Gilbert - Current opinion in genetics & development, 2014 - Elsevier
A recent flurry of reports correlates replication timing (RT) with mutation rates during both
evolution and cancer. Specifically, point mutations and copy number losses correlate with …

Differential relationship of DNA replication timing to different forms of human mutation and variation

A Koren, P Polak, J Nemesh, JJ Michaelson… - The American Journal of …, 2012 - cell.com
Human genetic variation is distributed nonrandomly across the genome, though the
principles governing its distribution are only partially known. DNA replication creates …

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition

SA Lujan, AR Clausen, AB Clark… - Genome …, 2014 - genome.cshlp.org
Mutational heterogeneity must be taken into account when reconstructing evolutionary
histories, calibrating molecular clocks, and predicting links between genes and disease …

Perturbations in the replication program contribute to genomic instability in cancer

B Blumenfeld, M Ben-Zimra, I Simon - International journal of molecular …, 2017 - mdpi.com
Cancer and genomic instability are highly impacted by the deoxyribonucleic acid (DNA)
replication program. Inaccuracies in DNA replication lead to the increased acquisition of …

High-resolution replication profiles define the stochastic nature of genome replication initiation and termination

M Hawkins, R Retkute, CA Müller, N Saner, TU Tanaka… - Cell reports, 2013 - cell.com
Eukaryotic genome replication is stochastic, and each cell uses a different cohort of
replication origins. We demonstrate that interpreting high-resolution Saccharomyces …

DNA replication and transcription programs respond to the same chromatin cues

Y Lubelsky, JA Prinz, L DeNapoli, Y Li… - Genome …, 2014 - genome.cshlp.org
DNA replication is a dynamic process that occurs in a temporal order along each of the
chromosomes. A consequence of the temporally coordinated activation of replication origins …

RIF1 regulates early replication timing in murine B cells

D Malzl, M Peycheva, A Rahjouei, S Gnan… - Nature …, 2023 - nature.com
The mammalian DNA replication timing (RT) program is crucial for the proper functioning
and integrity of the genome. The best-known mechanism for controlling RT is the …

Chromosomal Mcm2-7 distribution and the genome replication program in species from yeast to humans

EJ Foss, S Sripathy, T Gatbonton-Schwager… - PLoS …, 2021 - journals.plos.org
The spatio-temporal program of genome replication across eukaryotes is thought to be
driven both by the uneven loading of pre-replication complexes (pre-RCs) across the …

Replisome stall events have shaped the distribution of replication origins in the genomes of yeasts

TJ Newman, MA Mamun, CA Nieduszynski… - Nucleic acids …, 2013 - academic.oup.com
During S phase, the entire genome must be precisely duplicated, with no sections of DNA
left unreplicated. Here, we develop a simple mathematical model to describe the probability …

Replication stress, genomic instability, and replication timing: A complex relationship

LM Briu, C Maric, JC Cadoret - International journal of molecular sciences, 2021 - mdpi.com
The replication-timing program constitutes a key element of the organization and
coordination of numerous nuclear processes in eukaryotes. This program is established at a …