Bacteriophages of the human gut: the “known unknown” of the microbiome

AN Shkoporov, C Hill - Cell host & microbe, 2019 - cell.com
The human gut microbiome is a dense and taxonomically diverse consortium of
microorganisms. While the bacterial components of the microbiome have received …

The Baltimore classification of viruses 50 years later: how does it stand in the light of virus evolution?

EV Koonin, M Krupovic, VI Agol - Microbiology and Molecular …, 2021 - journals.asm.org
SUMMARY Fifty years ago, David Baltimore published a brief conceptual paper delineating
the classification of viruses by the routes of genome expression. The six “Baltimore classes” …

The biomass distribution on Earth

YM Bar-On, R Phillips, R Milo - Proceedings of the National Academy of …, 2018 - pnas.org
A census of the biomass on Earth is key for understanding the structure and dynamics of the
biosphere. However, a global, quantitative view of how the biomass of different taxa …

A catalogue of 1,167 genomes from the human gut archaeome

CM Chibani, A Mahnert, G Borrel, A Almeida… - Nature …, 2022 - nature.com
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …

The host-associated archaeome

G Borrel, JF Brugère, S Gribaldo, RA Schmitz… - Nature Reviews …, 2020 - nature.com
Host-associated microbial communities have an important role in sha** the health and
fitness of plants and animals. Most studies have focused on the bacterial, fungal or viral …

Origin of viruses: primordial replicators recruiting capsids from hosts

M Krupovic, VV Dolja, EV Koonin - Nature Reviews Microbiology, 2019 - nature.com
Viruses are ubiquitous parasites of cellular life and the most abundant biological entities on
Earth. It is widely accepted that viruses are polyphyletic, but a consensus scenario for their …

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

S Roux, M Krupovic, RA Daly, AL Borges… - Nature …, 2019 - nature.com
Bacteriophages from the Inoviridae family (inoviruses) are characterized by their unique
morphology, genome content and infection cycle. One of the most striking features of …

Megataxonomy and global ecology of the virosphere

EV Koonin, JH Kuhn, VV Dolja, M Krupovic - The ISME Journal, 2024 - academic.oup.com
Nearly all organisms are hosts to multiple viruses that collectively appear to be the most
abundant biological entities in the biosphere. With recent advances in metagenomics and …

Global organization and proposed megataxonomy of the virus world

EV Koonin, VV Dolja, M Krupovic… - Microbiology and …, 2020 - journals.asm.org
Viruses and mobile genetic elements are molecular parasites or symbionts that coevolve
with nearly all forms of cellular life. The route of virus replication and protein expression is …

Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes

Y Liu, TA Demina, S Roux, P Aiewsakun… - PLoS …, 2021 - journals.plos.org
The archaeal tailed viruses (arTV), evolutionarily related to tailed double-stranded DNA
(dsDNA) bacteriophages of the class Caudoviricetes, represent the most common isolates …