Function of alternative splicing

O Kelemen, P Convertini, Z Zhang, Y Wen, M Shen… - Gene, 2013 - Elsevier
Almost all polymerase II transcripts undergo alternative pre-mRNA splicing. Here, we review
the functions of alternative splicing events that have been experimentally determined. The …

The changing paradigm of intron retention: regulation, ramifications and recipes

G Monteuuis, JJL Wong, CG Bailey… - Nucleic acids …, 2019 - academic.oup.com
Intron retention (IR) is a form of alternative splicing that has long been neglected in
mammalian systems although it has been studied for decades in non-mammalian species …

[HTML][HTML] Genetic drivers of epigenetic and transcriptional variation in human immune cells

L Chen, B Ge, FP Casale, L Vasquez, T Kwan… - Cell, 2016 - cell.com
Characterizing the multifaceted contribution of genetic and epigenetic factors to disease
phenotypes is a major challenge in human genetics and medicine. We carried out high …

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

B Wang, E Tseng, M Regulski, TA Clark, T Hon… - Nature …, 2016 - nature.com
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

Y Marquez, JWS Brown, C Simpson, A Barta… - Genome …, 2012 - genome.cshlp.org
Alternative splicing (AS) is a key regulatory mechanism that contributes to transcriptome and
proteome diversity. As very few genome-wide studies analyzing AS in plants are available …

Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis)

H Zhao, Z Gao, L Wang, J Wang, S Wang, B Fei… - …, 2018 - academic.oup.com
Background Bamboo is one of the most important nontimber forestry products worldwide.
However, a chromosome-level reference genome is lacking, and an evolutionary view of …

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

R Zhang, CPG Calixto, Y Marquez… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …

Cardiometabolic risk loci share downstream cis-and trans-gene regulation across tissues and diseases

O Franzén, R Ermel, A Cohain, NK Akers, A Di Narzo… - Science, 2016 - science.org
Genome-wide association studies (GWAS) have identified hundreds of cardiometabolic
disease (CMD) risk loci. However, they contribute little to genetic variance, and most …

Analysis of transcriptome and epitranscriptome in plants using PacBio Iso-Seq and nanopore-based direct RNA sequencing

L Zhao, H Zhang, MV Kohnen, KVSK Prasad… - Frontiers in …, 2019 - frontiersin.org
Nanopore sequencing from Oxford Nanopore Technologies (ONT) and Pacific BioSciences
(PacBio) single-molecule real-time (SMRT) long-read isoform sequencing (Iso-Seq) are …

Reviving the transcriptome studies: an insight into the emergence of single-molecule transcriptome sequencing

B Wang, V Kumar, A Olson, D Ware - Frontiers in genetics, 2019 - frontiersin.org
Advances in transcriptomics have provided an exceptional opportunity to study functional
implications of the genetic variability. Technologies such as RNA-Seq have emerged as …