Data compression for sequencing data

S Deorowicz, S Grabowski - Algorithms for Molecular Biology, 2013 - Springer
Post-Sanger sequencing methods produce tons of data, and there is a generalagreement
that the challenge to store and process them must be addressedwith data compression. In …

High-throughput DNA sequence data compression

Z Zhu, Y Zhang, Z Ji, S He, X Yang - Briefings in bioinformatics, 2015 - academic.oup.com
The exponential growth of high-throughput DNA sequence data has posed great challenges
to genomic data storage, retrieval and transmission. Compression is a critical tool to address …

[書籍][B] Genome-scale algorithm design

V Mäkinen, D Belazzougui, F Cunial, AI Tomescu - 2015 - books.google.com
High-throughput sequencing has revolutionised the field of biological sequence analysis. Its
application has enabled researchers to address important biological questions, often for the …

TRACE: Real-time compression of streaming trajectories in road networks

T Li, L Chen, CS Jensen, TB Pedersen - Proceedings of the VLDB …, 2021 - vbn.aau.dk
The deployment of vehicle location services generates increasingly massive vehicle
trajectory data, which incurs high storage and transmission costs. A range of studies target …

Compression of uncertain trajectories in road networks

T Li, R Huang, L Chen, CS Jensen… - Proceedings of the VLDB …, 2020 - vbn.aau.dk
Massive volumes of uncertain trajectory data are being generated by GPS devices. Due to
the limitations of GPS data, these trajectories are generally uncertain. This state of affairs …

A survey on data compression methods for biological sequences

M Hosseini, D Pratas, AJ Pinho - Information, 2016 - mdpi.com
The ever increasing growth of the production of high-throughput sequencing data poses a
serious challenge to the storage, processing and transmission of these data. As frequently …

Compressive genomics

PR Loh, M Baym, B Berger - Nature biotechnology, 2012 - nature.com
Compressive genomics | Nature Biotechnology Skip to main content Thank you for visiting
nature.com. You are using a browser version with limited support for CSS. To obtain the best …

Memory-efficient assembly using Flye

B Freire, S Ladra, JR Paramá - IEEE/ACM Transactions on …, 2021 - ieeexplore.ieee.org
In the past decade, next-generation sequencing (NGS) enabled the generation of genomic
data in a cost-effective, high-throughput manner. The most recent third-generation …

Genomic data compression

M Hernaez, D Pavlichin, T Weissman… - Annual Review of …, 2019 - annualreviews.org
Recently, there has been growing interest in genome sequencing, driven by advances in
sequencing technology, in terms of both efficiency and affordability. These developments …

Efficient DNA sequence compression with neural networks

M Silva, D Pratas, AJ Pinho - GigaScience, 2020 - academic.oup.com
Background The increasing production of genomic data has led to an intensified need for
models that can cope efficiently with the lossless compression of DNA sequences. Important …