Why nature really chose phosphate
Phosphoryl transfer plays key roles in signaling, energy transduction, protein synthesis, and
maintaining the integrity of the genetic material. On the surface, it would appear to be a …
maintaining the integrity of the genetic material. On the surface, it would appear to be a …
Base excision repair and cancer
SS Wallace, DL Murphy, JB Sweasy - Cancer letters, 2012 - Elsevier
Base excision repair is the system used from bacteria to man to remove the tens of
thousands of endogenous DNA damages produced daily in each human cell. Base excision …
thousands of endogenous DNA damages produced daily in each human cell. Base excision …
Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide
Oxidative stress promotes genomic instability and human diseases. A common oxidized
nucleoside is 8-oxo-7, 8-dihydro-2′-deoxyguanosine, which is found both in DNA (8-oxo …
nucleoside is 8-oxo-7, 8-dihydro-2′-deoxyguanosine, which is found both in DNA (8-oxo …
Nucleic acid polymerases use a general acid for nucleotidyl transfer
C Castro, ED Smidansky, JJ Arnold… - Nature structural & …, 2009 - nature.com
Nucleic acid polymerases catalyze the formation of DNA or RNA from nucleoside-
triphosphate precursors. Amino acid residues in the active site of polymerases are thought to …
triphosphate precursors. Amino acid residues in the active site of polymerases are thought to …
Structure and mechanism of DNA polymerase β
WA Beard, SH Wilson - Biochemistry, 2014 - ACS Publications
DNA polymerase (pol) β is a small eukaryotic DNA polymerase composed of two domains.
Each domain contributes an enzymatic activity (DNA synthesis and deoxyribose phosphate …
Each domain contributes an enzymatic activity (DNA synthesis and deoxyribose phosphate …
DNA polymerase family X: function, structure, and cellular roles
J Yamtich, JB Sweasy - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2010 - Elsevier
The X family of DNA polymerases in eukaryotic cells consists of terminal transferase, and
DNA polymerases β, λ, and μ. These enzymes have similar structural portraits, yet different …
DNA polymerases β, λ, and μ. These enzymes have similar structural portraits, yet different …
The empirical valence bond model: theory and applications
SCL Kamerlin, A Warshel - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
Recent years have seen an explosion in computer power, allowing for the examination of
ever more challenging problems. For instance, a recent simulation study, which was the first …
ever more challenging problems. For instance, a recent simulation study, which was the first …
Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
DNA synthesis by DNA polymerases (dPols) is central to duplication and maintenance of the
genome in all living organisms. dPols catalyze the formation of a phosphodiester bond …
genome in all living organisms. dPols catalyze the formation of a phosphodiester bond …
How DNA polymerases catalyse replication and repair with contrasting fidelity
DNA polymerases were named for their function of catalysing DNA replication, a process
that is necessary for growth and propagation of life. DNA involving Watson–Crick base …
that is necessary for growth and propagation of life. DNA involving Watson–Crick base …
The EVB as a quantitative tool for formulating simulations and analyzing biological and chemical reactions
SCL Kamerlin, A Warshel - Faraday discussions, 2010 - pubs.rsc.org
Recent years have seen dramatic improvements in computer power, allowing ever more
challenging problems to be approached. In light of this, it is imperative to have a quantitative …
challenging problems to be approached. In light of this, it is imperative to have a quantitative …