Expansion of the eukaryotic proteome by alternative splicing
TW Nilsen, BR Graveley - Nature, 2010 - nature.com
The collection of components required to carry out the intricate processes involved in
generating and maintaining a living, breathing and, sometimes, thinking organism is …
generating and maintaining a living, breathing and, sometimes, thinking organism is …
RNA-seq: from technology to biology
Next-generation sequencing technologies are now being exploited not only to analyse static
genomes, but also dynamic transcriptomes in an approach termed RNA-seq. Although these …
genomes, but also dynamic transcriptomes in an approach termed RNA-seq. Although these …
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
We systematically generated large-scale data sets to improve genome annotation for the
nematode Caenorhabditis elegans, a key model organism. These data sets include …
nematode Caenorhabditis elegans, a key model organism. These data sets include …
Evolutionarily conserved principles predict 3D chromatin organization
Topologically associating domains (TADs), CTCF loop domains, and A/B compartments
have been identified as important structural and functional components of 3D chromatin …
have been identified as important structural and functional components of 3D chromatin …
Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs
Post-transcriptional gene regulation frequently occurs through elements in mRNA 3′
untranslated regions (UTRs),. Although crucial roles for 3′ UTR-mediated gene regulation …
untranslated regions (UTRs),. Although crucial roles for 3′ UTR-mediated gene regulation …
A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni
Schistosomiasis is one of the most prevalent parasitic diseases, affecting millions of people
in develo** countries. Amongst the human-infective species, Schistosoma mansoni is also …
in develo** countries. Amongst the human-infective species, Schistosoma mansoni is also …
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
Understanding the dynamics of eukaryotic transcriptome is essential for studying the
complexity of transcriptional regulation and its impact on phenotype. However …
complexity of transcriptional regulation and its impact on phenotype. However …
RNA‐Seq: a method for comprehensive transcriptome analysis
U Nagalakshmi, K Waern… - Current protocols in …, 2010 - Wiley Online Library
A recently developed technique called RNA Sequencing (RNA‐Seq) uses massively
parallel sequencing to allow transcriptome analyses of genomes at a far higher resolution …
parallel sequencing to allow transcriptome analyses of genomes at a far higher resolution …
Identification of fusion genes in breast cancer by paired-end RNA-sequencing
Background Until recently, chromosomal translocations and fusion genes have been an
underappreciated class of mutations in solid tumors. Next-generation sequencing …
underappreciated class of mutations in solid tumors. Next-generation sequencing …
Balanced codon usage optimizes eukaryotic translational efficiency
Cellular efficiency in protein translation is an important fitness determinant in rapidly growing
organisms. It is widely believed that synonymous codons are translated with unequal …
organisms. It is widely believed that synonymous codons are translated with unequal …