Persistence homology of networks: methods and applications

ME Aktas, E Akbas, AE Fatmaoui - Applied Network Science, 2019 - Springer
Abstract Information networks are becoming increasingly popular to capture complex
relationships across various disciplines, such as social networks, citation networks, and …

[HTML][HTML] Promises and pitfalls of topological data analysis for brain connectivity analysis

L Caputi, A Pidnebesna, J Hlinka - NeuroImage, 2021 - Elsevier
Develo** sensitive and reliable methods to distinguish normal and abnormal brain states
is a key neuroscientific challenge. Topological Data Analysis, despite its relative novelty …

Persistent path homology of directed networks

S Chowdhury, F Mémoli - Proceedings of the Twenty-Ninth Annual ACM-SIAM …, 2018 - SIAM
While standard persistent homology has been successful in extracting information from
metric datasets, its applicability to more general data, eg directed networks, is hindered by …

A functorial Dowker theorem and persistent homology of asymmetric networks

S Chowdhury, F Mémoli - Journal of Applied and Computational Topology, 2018 - Springer
We study two methods for computing network features with topological underpinnings: the
Rips and Dowker persistent homology diagrams. Our formulations work for general …

Sampling random graph homomorphisms and applications to network data analysis

H Lyu, F Mémoli, D Sivakoff - Journal of machine learning research, 2023 - jmlr.org
A graph homomorphism is a map between two graphs that preserves adjacency relations.
We consider the problem of sampling a random graph homomorphism from a graph into a …

Stable distance of persistent homology for dynamic graph comparison

D Ye, H Jiang, Y Jiang, H Li - Knowledge-Based Systems, 2023 - Elsevier
Persistent homology theory provides approaches for analyzing topological features, which is
now widely applied in graph comparison on social networks, biological networks, and co …

Path homologies of deep feedforward networks

S Chowdhury, T Gebhart, S Huntsman… - 2019 18th IEEE …, 2019 - ieeexplore.ieee.org
We provide a characterization of two types of directed homology for fully-connected,
feedforward neural network architectures. These exact characterizations of the directed …

On homotopy types of Vietoris–Rips complexes of metric gluings

M Adamaszek, H Adams, E Gasparovic… - Journal of Applied and …, 2020 - Springer
Abstract We study Vietoris–Rips complexes of metric wedge sums and metric gluings. We
show that the Vietoris–Rips complex of a wedge sum, equipped with a natural metric, is …

Path homologies of motifs and temporal network representations

S Chowdhury, S Huntsman, M Yutin - Applied Network Science, 2022 - Springer
Path homology is a powerful method for attaching algebraic invariants to digraphs. While
there have been growing theoretical developments on the algebro-topological framework …

Tracing patterns and shapes in remittance and migration networks via persistent homology

PSP Ignacio, IK Darcy - EPJ Data science, 2019 - epjds.epj.org
Pattern detection in network models provides insights to both global structure and local node
interactions. In particular, studying patterns embedded within remittance and migration flow …