Tara Oceans: towards global ocean ecosystems biology

S Sunagawa, SG Acinas, P Bork, C Bowler… - Nature Reviews …, 2020 - nature.com
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …

Carbon export in the ocean: A biologist's perspective

MH Iversen - Annual Review of Marine Science, 2023 - annualreviews.org
Understanding the nature of organic matter flux in the ocean remains a major goal of
oceanography because it impacts some of the most important processes in the ocean …

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

AE Parada, DM Needham… - Environmental …, 2016 - Wiley Online Library
Microbial community analysis via high‐throughput sequencing of amplified 16S rRNA genes
is an essential microbiology tool. We found the popular primer pair 515F (515F‐C) and …

Diversity and ecological footprint of Global Ocean RNA viruses

G Dominguez-Huerta, AA Zayed, JM Wainaina, J Guo… - Science, 2022 - science.org
DNA viruses are increasingly recognized as influencing marine microbes and microbe-
mediated biogeochemical cycling. However, little is known about global marine RNA virus …

Marine microbial community dynamics and their ecological interpretation

JA Fuhrman, JA Cram, DM Needham - Nature Reviews Microbiology, 2015 - nature.com
Recent advances in studying the dynamics of marine microbial communities have shown
that the composition of these communities follows predictable patterns and involves complex …

Analysing microbial community composition through amplicon sequencing: from sampling to hypothesis testing

LW Hugerth, AF Andersson - Frontiers in microbiology, 2017 - frontiersin.org
Microbial ecology as a scientific field is fundamentally driven by technological advance. The
past decade's revolution in DNA sequencing cost and throughput has made it possible for …

Cohesion: a method for quantifying the connectivity of microbial communities

CM Herren, KD McMahon - The ISME Journal, 2017 - academic.oup.com
The ability to predict microbial community dynamics lags behind the quantity of data
available in these systems. Most predictive models use only environmental parameters …

Keystone taxa predict compositional change in microbial communities

CM Herren, KD McMahon - Environmental Microbiology, 2018 - Wiley Online Library
The influence of biotic interactions on microbial community assembly is intensely debated.
We hypothesized that keystone taxa, which influence community assembly through strong …

[HTML][HTML] Marine bacterioplankton seasonal succession dynamics

C Bunse, J Pinhassi - Trends in microbiology, 2017 - cell.com
Bacterioplankton (bacteria and archaea) are indispensable regulators of global element
cycles owing to their unique ability to decompose and remineralize dissolved organic matter …

Implementing and innovating marine monitoring approaches for assessing marine environmental status

R Danovaro, L Carugati, M Berzano… - Frontiers in Marine …, 2016 - frontiersin.org
Marine environmental monitoring has tended to focus on site-specific methods of
investigation. These traditional methods have low spatial and temporal resolution and are …