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Structural variation in the 3D genome
Structural and quantitative chromosomal rearrangements, collectively referred to as
structural variation (SV), contribute to a large extent to the genetic diversity of the human …
structural variation (SV), contribute to a large extent to the genetic diversity of the human …
Increased enhancer–promoter interactions during developmental enhancer activation in mammals
Remote enhancers are thought to interact with their target promoters via physical proximity,
yet the importance of this proximity for enhancer function remains unclear. Here we …
yet the importance of this proximity for enhancer function remains unclear. Here we …
Hi-C identifies complex genomic rearrangements and TAD-shuffling in developmental diseases
Genome-wide analysis methods, such as array comparative genomic hybridization (CGH)
and whole-genome sequencing (WGS), have greatly advanced the identification of structural …
and whole-genome sequencing (WGS), have greatly advanced the identification of structural …
Complex structural variants in Mendelian disorders: identification and breakpoint resolution using short-and long-read genome sequencing
Background Studies have shown that complex structural variants (cxSVs) contribute to
human genomic variation and can cause Mendelian disease. We aimed to identify cxSVs …
human genomic variation and can cause Mendelian disease. We aimed to identify cxSVs …
Chromatin features constrain structural variation across evolutionary timescales
The potential impact of structural variants includes not only the duplication or deletion of
coding sequences, but also the perturbation of noncoding DNA regulatory elements and …
coding sequences, but also the perturbation of noncoding DNA regulatory elements and …
Combining callers improves the detection of copy number variants from whole-genome sequencing
Abstract Copy Number Variants (CNVs) are deletions, duplications or insertions larger than
50 base pairs. They account for a large percentage of the normal genome variation and play …
50 base pairs. They account for a large percentage of the normal genome variation and play …
The performance of genome sequencing as a first-tier test for neurodevelopmental disorders
BPGH van der Sanden, G Schobers… - European Journal of …, 2023 - nature.com
Genome sequencing (GS) can identify novel diagnoses for patients who remain
undiagnosed after routine diagnostic procedures. We tested whether GS is a better first-tier …
undiagnosed after routine diagnostic procedures. We tested whether GS is a better first-tier …
Expanded insights into mechanisms of gene expression and disease related disruptions
M Smith, PL Flodman - Frontiers in molecular biosciences, 2018 - frontiersin.org
Definitive molecular diagnoses in disorders apparently due to genetic or genomic defects
are still lacking in a significant number of investigated cases, despite use of studies …
are still lacking in a significant number of investigated cases, despite use of studies …
Computational and experimental methods for classifying variants of unknown clinical significance
The increase in sequencing capacity, reduction in costs, and national and international
coordinated efforts have led to the widespread introduction of next-generation sequencing …
coordinated efforts have led to the widespread introduction of next-generation sequencing …
CNVxplorer: a web tool to assist clinical interpretation of CNVs in rare disease patients
Abstract Copy Number Variants (CNVs) are an important cause of rare diseases. Array-
based Comparative Genomic Hybridization tests yield a∼ 12% diagnostic rate, with∼ 8% of …
based Comparative Genomic Hybridization tests yield a∼ 12% diagnostic rate, with∼ 8% of …