[HTML][HTML] Phaser. MRage: automated molecular replacement

G Bunkóczi, N Echols, AJ McCoy… - Biological …, 2013‏ - journals.iucr.org
Phaser. MRage is a molecular-replacement automation framework that implements a full
model-generation workflow and provides several layers of model exploration to the user. It is …

Design of protein-binding proteins from the target structure alone

L Cao, B Coventry, I Goreshnik, B Huang, W Sheffler… - Nature, 2022‏ - nature.com
The design of proteins that bind to a specific site on the surface of a target protein using no
information other than the three-dimensional structure of the target remains a challenge …

Methods for the refinement of protein structure 3D models

R Adiyaman, LJ McGuffin - International journal of molecular sciences, 2019‏ - mdpi.com
The refinement of predicted 3D protein models is crucial in bringing them closer towards
experimental accuracy for further computational studies. Refinement approaches can be …

New world bats harbor diverse influenza A viruses

S Tong, X Zhu, Y Li, M Shi, J Zhang, M Bourgeois… - PLoS …, 2013‏ - journals.plos.org
Aquatic birds harbor diverse influenza A viruses and are a major viral reservoir in nature.
The recent discovery of influenza viruses of a new H17N10 subtype in Central American fruit …

[HTML][HTML] Histone recognition and large-scale structural analysis of the human bromodomain family

P Filippakopoulos, S Picaud, M Mangos, T Keates… - Cell, 2012‏ - cell.com
Bromodomains (BRDs) are protein interaction modules that specifically recognize ε-N-lysine
acetylation motifs, a key event in the reading process of epigenetic marks. The 61 BRDs in …

Structural basis for potency and promiscuity in poly (ADP-ribose) polymerase (PARP) and tankyrase inhibitors

AG Thorsell, T Ekblad, T Karlberg… - Journal of medicinal …, 2017‏ - ACS Publications
Selective inhibitors could help unveil the mechanisms by which inhibition of poly (ADP-
ribose) polymerases (PARPs) elicits clinical benefits in cancer therapy. We profiled 10 …

Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma

M Krauthammer, Y Kong, BH Ha, P Evans… - Nature …, 2012‏ - nature.com
We characterized the mutational landscape of melanoma, the form of skin cancer with the
highest mortality rate, by sequencing the exomes of 147 melanomas. Sun-exposed …

Structure of the human inner kinetochore bound to a centromeric CENP-A nucleosome

S Yatskevich, KW Muir, D Bellini, Z Zhang, J Yang… - Science, 2022‏ - science.org
Kinetochores assemble onto specialized centromeric CENP-A (centromere protein A)
nucleosomes (CENP-ANuc) to mediate attachments between chromosomes and the mitotic …

Broadly protective human antibodies that target the active site of influenza virus neuraminidase

D Stadlbauer, X Zhu, M McMahon, JS Turner… - Science, 2019‏ - science.org
Better vaccines against influenza virus are urgently needed to provide broader protection
against diverse strains, subtypes, and types. Such efforts are assisted by the identification of …

High-resolution protein structure determination by serial femtosecond crystallography

S Boutet, L Lomb, GJ Williams, TRM Barends, A Aquila… - Science, 2012‏ - science.org
Structure determination of proteins and other macromolecules has historically required the
growth of high-quality crystals sufficiently large to diffract x-rays efficiently while withstanding …