Topologically faithful image segmentation via induced matching of persistence barcodes
N Stucki, JC Paetzold, S Shit… - … on Machine Learning, 2023 - proceedings.mlr.press
Segmentation models predominantly optimize pixel-overlap-based loss, an objective that is
actually inadequate for many segmentation tasks. In recent years, their limitations fueled a …
actually inadequate for many segmentation tasks. In recent years, their limitations fueled a …
Semi-supervised segmentation of histopathology images with noise-aware topological consistency
In digital pathology, segmenting densely distributed objects like glands and nuclei is crucial
for downstream analysis. Since detailed pixel-wise annotations are very time-consuming, we …
for downstream analysis. Since detailed pixel-wise annotations are very time-consuming, we …
FFS-Net: Fourier-based segmentation of colon cancer glands using frequency and spatial edge interaction
YB Luo, JH Cai, P Le Qin, R Chai, SJ Zhai… - Expert Systems with …, 2025 - Elsevier
The morphological features of glands provide a reliable basis for pathologists to diagnose
colon cancer correctly. Currently, most methods are limited in their ability to address blurred …
colon cancer correctly. Currently, most methods are limited in their ability to address blurred …
[HTML][HTML] Automating ground truth annotations for gland segmentation through immunohistochemistry
Microscopic evaluation of glands in the colon is of utmost importance in the diagnosis of
inflammatory bowel disease and cancer. When properly trained, deep learning pipelines …
inflammatory bowel disease and cancer. When properly trained, deep learning pipelines …
SIAN: style-guided instance-adaptive normalization for multi-organ histopathology image synthesis
Existing deep neural networks for histopathology image synthesis cannot generate image
styles that align with different organs, and cannot produce accurate boundaries of clustered …
styles that align with different organs, and cannot produce accurate boundaries of clustered …
[HTML][HTML] Topology-sensitive weighting model for myocardial segmentation
Accurate myocardial segmentation is crucial for the diagnosis of various heart diseases.
However, segmentation results often suffer from topology structural errors, such as broken …
However, segmentation results often suffer from topology structural errors, such as broken …
PEA-Net: A progressive edge information aggregation network for vessel segmentation
Automatic vessel segmentation is a critical area of research in medical image analysis, as it
can greatly assist doctors in accurately and efficiently diagnosing vascular diseases …
can greatly assist doctors in accurately and efficiently diagnosing vascular diseases …
Conformable Convolution for Topologically Aware Learning of Complex Anatomical Structures
While conventional computer vision emphasizes pixel-level and feature-based objectives,
medical image analysis of intricate biological structures necessitates explicit representation …
medical image analysis of intricate biological structures necessitates explicit representation …
MSNSegNet: attention-based multi-shape nuclei instance segmentation in histopathology images
Z Qian, Z Wang, X Zhang, B Wei, M Lai, J Shou… - Medical & Biological …, 2024 - Springer
In clinical research, the segmentation of irregularly shaped nuclei, particularly in
mesenchymal areas like fibroblasts, is crucial yet often neglected. These irregular nuclei are …
mesenchymal areas like fibroblasts, is crucial yet often neglected. These irregular nuclei are …
TopoSemiSeg: Enforcing Topological Consistency for Semi-Supervised Segmentation of Histopathology Images
In computational pathology, segmenting densely distributed objects like glands and nuclei is
crucial for downstream analysis. To alleviate the burden of obtaining pixel-wise annotations …
crucial for downstream analysis. To alleviate the burden of obtaining pixel-wise annotations …