A glossary of DNA structures from A to Z
A Ghosh, M Bansal - Acta Crystallographica Section D: Biological …, 2003 - journals.iucr.org
The right-handed double-helical Watson–Crick model for B-form DNA is the most commonly
known DNA structure. In addition to this classic structure, several other forms of DNA have …
known DNA structure. In addition to this classic structure, several other forms of DNA have …
[5] DNA structure from A to Z
RE Dickerson - Methods in Enzymology, 1992 - Elsevier
Publisher Summary This chapter shows sixteen-base-pair lengths of A-, B-, and Z-DNA on a
uniform scale, as a comparison and an illustration of their distinguishing features. Mean …
uniform scale, as a comparison and an illustration of their distinguishing features. Mean …
DNA sequence-dependent deformability deduced from protein–DNA crystal complexes
WK Olson, AA Gorin, XJ Lu… - Proceedings of the …, 1998 - National Acad Sciences
The deformability of double helical DNA is critical for its packaging in the cell, recognition by
other molecules, and transient opening during biochemically important processes. Here, a …
other molecules, and transient opening during biochemically important processes. Here, a …
DNA bending: the prevalence of kinkiness and the virtues of normality
RE Dickerson - Nucleic acids research, 1998 - academic.oup.com
DNA bending in 86 complexes with sequence-specific proteins has been examined using
normal vector plots, matrices of normal vector angles between all base pairs in the helix, and …
normal vector plots, matrices of normal vector angles between all base pairs in the helix, and …
A third mode of DNA binding: phosphate clamps by a polynuclear platinum complex
S Komeda, T Moulaei, KK Woods… - Journal of the …, 2006 - ACS Publications
We describe a 1.2 Å X-ray structure of a double-stranded B-DNA dodecamer (the Dickerson
Dodecamer, DDD,[d (CGCGAATTCGCG)] 2) associated with a cytotoxic platinum (II) …
Dodecamer, DDD,[d (CGCGAATTCGCG)] 2) associated with a cytotoxic platinum (II) …
Double-proton transfer in adenine− thymine and guanine− cytosine base pairs. A post-hartree− fock ab initio study
L Gorb, Y Podolyan, P Dziekonski… - Journal of the …, 2004 - ACS Publications
The results of a comprehensive study on the double-proton transfer in Adenine− Thymine
(AT) and Guanine− Cytosine (GC) base pairs at room temperature in gas phase and with the …
(AT) and Guanine− Cytosine (GC) base pairs at room temperature in gas phase and with the …
Modelling extreme stretching of DNA
A Lebrun, R Lavery - Nucleic acids research, 1996 - academic.oup.com
Molecular modelling with Jumna is used to study extreme stretching of the DNA double
helix. The results, which correlate well with recent nanomanipulation experiments, show …
helix. The results, which correlate well with recent nanomanipulation experiments, show …
Methylene blue binding to DNA with alternating GC base sequence: a modeling study
Photoactive methylene blue is one of the most efficient singlet oxygen generating dyes. It
binds to DNA and induces photosensitized reactions which can be used for sequence …
binds to DNA and induces photosensitized reactions which can be used for sequence …
Structure of the B-DNA decamer CCAACGTTGG and comparison with isomorphous decamers CCAAGATTGG and CCAGGCCTGG
GG Privé, K Yanagi, RE Dickerson - Journal of molecular biology, 1991 - Elsevier
The crystal structure of the DNA decamer CCAACGTTGG has been solved to a resolution of
1.4 Å, and is compared with the 1.3 Å structure of CCAAGATTGG and the 1.6 Å structure of …
1.4 Å, and is compared with the 1.3 Å structure of CCAAGATTGG and the 1.6 Å structure of …
JUMNA (junction minimisation of nucleic acids)
R Lavery, K Zakrzewska, H Sklenar - Computer Physics Communications, 1995 - Elsevier
The latest version of JUMNA program for the energy optimisation of nucleic acids and
nucleic acid-ligand complexes is described. The force field used, input and output data …
nucleic acid-ligand complexes is described. The force field used, input and output data …