Decoding the tumor microenvironment with spatial technologies

LA Walsh, DF Quail - Nature immunology, 2023 - nature.com
Visualization of the cellular heterogeneity and spatial architecture of the tumor
microenvironment (TME) is becoming increasingly important to understand mechanisms of …

Tissue clearing and its applications in neuroscience

HR Ueda, A Ertürk, K Chung, V Gradinaru… - Nature Reviews …, 2020 - nature.com
State-of-the-art tissue-clearing methods provide subcellular-level optical access to intact
tissues from individual organs and even to some entire mammals. When combined with light …

[HTML][HTML] A transcriptomic axis predicts state modulation of cortical interneurons

S Bugeon, J Duffield, M Dipoppa, A Ritoux, I Prankerd… - Nature, 2022 - nature.com
Transcriptomics has revealed that cortical inhibitory neurons exhibit a great diversity of fine
molecular subtypes,,,,–, but it is not known whether these subtypes have correspondingly …

A roadmap for the human developmental cell atlas

M Haniffa, D Taylor, S Linnarsson, BJ Aronow… - Nature, 2021 - nature.com
Abstract The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human
Cell Atlas, aims to create a comprehensive reference map of cells during development. This …

Three-dimensional intact-tissue sequencing of single-cell transcriptional states

X Wang, WE Allen, MA Wright, EL Sylwestrak… - Science, 2018 - science.org
INTRODUCTION Single-cell RNA sequencing has demonstrated that both stable cell types
and transient cell states can be discovered and defined by transcriptomes. In situ …

Protection of tissue physicochemical properties using polyfunctional crosslinkers

YG Park, CH Sohn, R Chen, M McCue, DH Yun… - Nature …, 2019 - nature.com
Understanding complex biological systems requires the system-wide characterization of
both molecular and cellular features. Existing methods for spatial map** of biomolecules …

Integration of optogenetics with complementary methodologies in systems neuroscience

CK Kim, A Adhikari, K Deisseroth - Nature Reviews Neuroscience, 2017 - nature.com
Modern optogenetics can be tuned to evoke activity that corresponds to naturally occurring
local or global activity in timing, magnitude or individual-cell patterning. This outcome has …

[HTML][HTML] Uncovering an organ's molecular architecture at single-cell resolution by spatially resolved transcriptomics

J Liao, X Lu, X Shao, L Zhu, X Fan - Trends in biotechnology, 2021 - cell.com
Revealing fine-scale cellular heterogeneity among spatial context and the functional and
structural foundations of tissue architecture is fundamental within biological research and …

Molecular atlas of the adult mouse brain

C Ortiz, JF Navarro, A Jurek, A Märtin, J Lundeberg… - Science …, 2020 - science.org
Brain maps are essential for integrating information and interpreting the structure-function
relationship of circuits and behavior. We aimed to generate a systematic classification of the …

Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy

HR Ueda, HU Dodt, P Osten, MN Economo… - Neuron, 2020 - cell.com
Tissue clearing and light-sheet microscopy have a 100-year-plus history, yet these fields
have been combined only recently to facilitate novel experiments and measurements in …