New whole-genome alignment tools are needed for tap** into plant diversity
Genome alignment is one of the most foundational methods for genome sequence studies.
With rapid advances in sequencing and assembly technologies, these newly assembled …
With rapid advances in sequencing and assembly technologies, these newly assembled …
The application gap: Genomics for biodiversity and ecosystem service management
The conservation of biodiversity from the genetic to the community levels is fundamental for
the continual provision of ecosystem services (ES), the benefits that ecosystems provide to …
the continual provision of ecosystem services (ES), the benefits that ecosystems provide to …
Sensitive protein alignments at tree-of-life scale using DIAMOND
We are at the beginning of a genomic revolution in which all known species are planned to
be sequenced. Accessing such data for comparative analyses is crucial in this new age of …
be sequenced. Accessing such data for comparative analyses is crucial in this new age of …
Representation and participation across 20 years of plant genome sequencing
The field of plant genome sequencing has grown rapidly in the past 20 years, leading to
increases in the quantity and quality of publicly available genomic resources. The growing …
increases in the quantity and quality of publicly available genomic resources. The growing …
Green plant genomes: What we know in an era of rapidly expanding opportunities
Green plants play a fundamental role in ecosystems, human health, and agriculture. As de
novo genomes are being generated for all known eukaryotic species as advocated by the …
novo genomes are being generated for all known eukaryotic species as advocated by the …
CNSA: a data repository for archiving omics data
X Guo, F Chen, F Gao, L Li, K Liu, L You, C Hua… - Database, 2020 - academic.oup.com
With the application and development of high-throughput sequencing technology in life and
health sciences, massive multi-omics data brings the problem of efficient management and …
health sciences, massive multi-omics data brings the problem of efficient management and …
Designing future crops: challenges and strategies for sustainable agriculture
Z Tian, JW Wang, J Li, B Han - The Plant Journal, 2021 - Wiley Online Library
Crop production is facing unprecedented challenges. Despite the fact that the food supply
has significantly increased over the past half‐century,~ 8.9 and 14.3% people are still …
has significantly increased over the past half‐century,~ 8.9 and 14.3% people are still …
HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome …
Abstract Background Pacific Biosciences HiFi read technology is currently the industry
standard for high accuracy long-read sequencing that has been widely adopted by large …
standard for high accuracy long-read sequencing that has been widely adopted by large …
AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication
Millions of species are currently being sequenced, and their genomes are being compared.
Many of them have more complex genomes than model systems and raise novel challenges …
Many of them have more complex genomes than model systems and raise novel challenges …
[HTML][HTML] A conservation genomics workflow to guide practical management actions
Owing to decreasing costs and increased efficiency, it is now conceivable that conservation
genomic information can be used to improve the effectiveness of recovery programs for …
genomic information can be used to improve the effectiveness of recovery programs for …