Big data in public health: terminology, machine learning, and privacy

SJ Mooney, V Pejaver - Annual review of public health, 2018‏ - annualreviews.org
The digital world is generating data at a staggering and still increasing rate. While these “big
data” have unlocked novel opportunities to understand public health, they hold still greater …

Microarray data normalization and transformation

J Quackenbush - Nature genetics, 2002‏ - nature.com
Underlying every microarray experiment is an experimental question that one would like to
address. Finding a useful and satisfactory answer relies on careful experimental design and …

Microbiota from Alzheimer's patients induce deficits in cognition and hippocampal neurogenesis

S Grabrucker, M Marizzoni, E Silajdžić, N Lopizzo… - Brain, 2023‏ - academic.oup.com
Alzheimer's disease is a complex neurodegenerative disorder leading to a decline in
cognitive function and mental health. Recent research has positioned the gut microbiota as …

[کتاب][B] Measurement error in nonlinear models: a modern perspective

RJ Carroll, D Ruppert, LA Stefanski, CM Crainiceanu - 2006‏ - taylorfrancis.com
It's been over a decade since the first edition of Measurement Error in Nonlinear Models
splashed onto the scene, and research in the field has certainly not cooled in the interim. In …

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

W Huber, A Von Heydebreck, H Sültmann… - …, 2002‏ - academic.oup.com
We introduce a statistical model for microarray gene expression data that comprises data
calibration, the quantification of differential expression, and the quantification of …

[PDF][PDF] Discovering regulatory and signalling circuits in molecular interaction networks

T Ideker, O Ozier, B Schwikowski, AF Siegel - Bioinformatics, 2002‏ - academia.edu
Motivation: In model organisms such as yeast, large databases of protein–protein and
protein-DNA interactions have become an extremely important resource for the study of …

Statistical tests for differential expression in cDNA microarray experiments

X Cui, GA Churchill - Genome biology, 2003‏ - Springer
Extracting biological information from microarray data requires appropriate statistical
methods. The simplest statistical method for detecting differential expression is the t test …

Addressing accuracy and precision issues in iTRAQ quantitation

NA Karp, W Huber, PG Sadowski… - Molecular & Cellular …, 2010‏ - mcponline.org
iTRAQ (isobaric tags for relative or absolute quantitation) is a mass spectrometry technology
that allows quantitative comparison of protein abundance by measuring peak intensities of …

Detecting differential gene expression with a semiparametric hierarchical mixture method

MA Newton, A Noueiry, D Sarkar, P Ahlquist - Biostatistics, 2004‏ - academic.oup.com
Mixture modeling provides an effective approach to the differential expression problem in
microarray data analysis. Methods based on fully parametric mixture models are available …

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

J Yang, T Huang, F Petralia, Q Long, B Zhang… - Scientific reports, 2015‏ - nature.com
Aging is one of the most important biological processes and is a known risk factor for many
age-related diseases in human. Studying age-related transcriptomic changes in tissues …