Non-lysine ubiquitylation: Doing things differently

IR Kelsall - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
The post-translational modification of proteins with ubiquitin plays a central role in nearly all
aspects of eukaryotic biology. Historically, studies have focused on the conjugation of …

Resolving the complexity of ubiquitin networks

K Kliza, K Husnjak - Frontiers in molecular biosciences, 2020 - frontiersin.org
Ubiquitination regulates nearly all cellular processes by coordinated activity of ubiquitin
writers (E1, E2, and E3 enzymes), erasers (deubiquitinating enzymes) and readers (proteins …

UbiSite approach for comprehensive map** of lysine and N-terminal ubiquitination sites

V Akimov, I Barrio-Hernandez, SVF Hansen… - Nature structural & …, 2018 - nature.com
Ubiquitination is a post-translational modification (PTM) that is essential for balancing
numerous physiological processes. To enable delineation of protein ubiquitination at a site …

Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates

F Trulsson, V Akimov, M Robu, N van Overbeek… - Nature …, 2022 - nature.com
The ubiquitin-proteasome axis has been extensively explored at a system-wide level, but the
impact of deubiquitinating enzymes (DUBs) on the ubiquitinome remains largely unknown …

Instant clue: a software suite for interactive data visualization and analysis

H Nolte, TD MacVicar, F Tellkamp, M Krüger - Scientific reports, 2018 - nature.com
The development of modern high-throughput instrumentation and improved core facility
infrastructures leads to an accumulation of large amounts of scientific data. However, for a …

Current methodologies in protein ubiquitination characterization: from ubiquitinated protein to ubiquitin chain architecture

M Sun, X Zhang - Cell & Bioscience, 2022 - Springer
Ubiquitination is a versatile post-translational modification (PTM), which regulates diverse
fundamental features of protein substrates, including stability, activity, and localization …

DDI2 is a ubiquitin-directed endoprotease responsible for cleavage of transcription factor NRF1

AB Dirac-Svejstrup, J Walker, P Faull, V Encheva… - Molecular cell, 2020 - cell.com
The Ddi1/DDI2 proteins are ubiquitin shuttling factors, implicated in a variety of cellular
functions. In addition to ubiquitin-binding and ubiquitin-like domains, they contain a …

Pulmonary maternal immune activation does not cross the placenta but leads to fetal metabolic adaptation

SSK Hansen, R Krautz, D Rago, J Havelund… - Nature …, 2024 - nature.com
The fetal development of organs and functions is vulnerable to perturbation by maternal
inflammation which may increase susceptibility to disorders after birth. Because it is not well …

UBE2D3 facilitates NHEJ by orchestrating ATM signalling through multi-level control of RNF168

Z Yalçin, SY Lam, MH Peuscher, J van der Torre… - Nature …, 2024 - nature.com
Maintenance of genome integrity requires tight control of DNA damage response (DDR)
signalling and repair, with phosphorylation and ubiquitination representing key elements …

Proteomic approaches to study ubiquitinomics

I Sahu, H Zhu, SJ Buhrlage, JA Marto - Biochimica et Biophysica Acta (BBA) …, 2023 - Elsevier
As originally described some 40 years ago, protein ubiquitination was thought to serve
primarily as a static mark for protein degradation. In the ensuing years, it has become clear …