Advances and opportunities in image analysis of bacterial cells and communities

H Jeckel, K Drescher - FEMS Microbiology Reviews, 2021 - academic.oup.com
The cellular morphology and sub-cellular spatial structure critically influence the function of
microbial cells. Similarly, the spatial arrangement of genotypes and phenotypes in microbial …

Optical coherence tomography in biofilm research: a comprehensive review

M Wagner, H Horn - Biotechnology and Bioengineering, 2017 - Wiley Online Library
Imaging of biofilm systems is a prerequisite for a better understanding of both structure and
its function. The review aims to critically discuss the use of optical coherence tomography …

LCU-Net: A novel low-cost U-Net for environmental microorganism image segmentation

J Zhang, C Li, S Kosov, M Grzegorzek, K Shirahama… - Pattern Recognition, 2021 - Elsevier
In this paper, we propose a novel Low-cost U-Net (LCU-Net) for the Environmental
Microorganism (EM) image segmentation task to assist microbiologists in detecting and …

Quantitative image analysis of microbial communities with BiofilmQ

R Hartmann, H Jeckel, E Jelli, PK Singh, S Vaidya… - Nature …, 2021 - nature.com
Biofilms are microbial communities that represent a highly abundant form of microbial life on
Earth. Inside biofilms, phenotypic and genotypic variations occur in three-dimensional space …

[BOK][B] Fundamentals of biofilm research

Z Lewandowski, H Beyenal - 2013 - books.google.com
The six years that have passed since the publication of the first edition have brought
significant advances in both biofilm research and biofilm engineering, which have matured …

Green synthesis of silver and iron oxide nanoparticles mediated photothermal effects on Blastocystis hominis

SMI Alexeree, HM Abou-Seri, HES El-Din… - Lasers in Medical …, 2024 - Springer
The evolution of parasite resistance to antiparasitic agents has become a serious health
issue indicating a critical and pressing need to develop new therapeutics that can conquer …

A state-of-the-art survey for microorganism image segmentation methods and future potential

F Kulwa, C Li, X Zhao, B Cai, N Xu, S Qi, S Chen… - Ieee …, 2019 - ieeexplore.ieee.org
Microorganisms play a great role in ecosystem, wastewater treatment, monitoring of
environmental changes, and decomposition of waste materials. However, some of them are …

Investigation of microbial biofilm structure by laser scanning microscopy

TR Neu, JR Lawrence - Productive Biofilms, 2014 - Springer
<? xm-replace_text {Heading}?> Abstract Microbial bioaggregates and biofilms are hydrated
three-dimensional structures of cells and extracellular polymeric substances (EPS) …

BiofilmQ, a software tool for quantitative image analysis of microbial biofilm communities

R Hartmann, H Jeckel, E Jelli, PK Singh, S Vaidya… - BioRxiv, 2019 - biorxiv.org
Biofilms are now considered to be the most abundant form of microbial life on Earth, playing
critical roles in biogeochemical cycles, agriculture, and health care. Phenotypic and …

A sensitive thresholding method for confocal laser scanning microscope image stacks of microbial biofilms

TL Luo, MC Eisenberg, MAL Hayashi… - Scientific reports, 2018 - nature.com
Biofilms are surface-attached microbial communities whose architecture can be captured
with confocal microscopy. Manual or automatic thresholding of acquired images is often …