Global extraintestinal pathogenic Escherichia coli (ExPEC) lineages

AR Manges, HM Geum, A Guo, TJ Edens… - Clinical microbiology …, 2019 - journals.asm.org
SUMMARY Extraintestinal pathogenic Escherichia coli (ExPEC) strains are responsible for a
majority of human extraintestinal infections globally, resulting in enormous direct medical …

The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota

C Milani, S Duranti, F Bottacini, E Casey… - Microbiology and …, 2017 - journals.asm.org
The human gut microbiota is engaged in multiple interactions affecting host health during
the host's entire life span. Microbes colonize the neonatal gut immediately following birth …

[HTML][HTML] Enterosignatures define common bacterial guilds in the human gut microbiome

C Frioux, R Ansorge, E Özkurt, CG Nedjad, J Fritscher… - Cell Host & Microbe, 2023 - cell.com
The human gut microbiome composition is generally in a stable dynamic equilibrium, but it
can deteriorate into dysbiotic states detrimental to host health. To disentangle the inherent …

Mother-to-infant microbial transmission from different body sites shapes the develo** infant gut microbiome

P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi… - Cell host & …, 2018 - cell.com
The acquisition and development of the infant microbiome are key to establishing a healthy
host-microbiome symbiosis. The maternal microbial reservoir is thought to play a crucial role …

Gut microbiota and diarrhea: an updated review

Y Li, S **a, X Jiang, C Feng, S Gong, J Ma… - Frontiers in cellular …, 2021 - frontiersin.org
Diarrhea is a common problem to the whole world and the occurrence of diarrhea is highly
associated with gut microbiota, such as bacteria, fungi, and viruses. Generally, diarrheal …

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

MR Olm, CT Brown, B Brooks, JF Banfield - The ISME journal, 2017 - academic.oup.com
The number of microbial genomes sequenced each year is expanding rapidly, in part due to
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …

The role of the microbiome in cancer development and therapy

AP Bhatt, MR Redinbo… - CA: a cancer journal for …, 2017 - Wiley Online Library
Answer questions and earn CME/CNE The human body harbors enormous numbers of
microbiota that influence cancer susceptibility, in part through their prodigious metabolic …

Microbial strain-level population structure and genetic diversity from metagenomes

DT Truong, A Tett, E Pasolli, C Huttenhower… - Genome …, 2017 - genome.cshlp.org
Among the human health conditions linked to microbial communities, phenotypes are often
associated with only a subset of strains within causal microbial groups. Although it has been …

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

M Pammi, J Cope, PI Tarr, BB Warner, AL Morrow… - Microbiome, 2017 - Springer
Background Necrotizing enterocolitis (NEC) is a catastrophic disease of preterm infants, and
microbial dysbiosis has been implicated in its pathogenesis. Studies evaluating the …

Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis

AC Masi, ND Embleton, CA Lamb, G Young… - Gut, 2021 - gut.bmj.com
Objective Necrotising enterocolitis (NEC) is a devastating intestinal disease primarily
affecting preterm infants. The underlying mechanisms are poorly understood: mother's own …