Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …

ASAP: assemble species by automatic partitioning

N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …

Plant diversity accurately predicts insect diversity in two tropical landscapes

K Zhang, S Lin, Y Ji, C Yang, X Wang, C Yang… - Molecular …, 2016 - Wiley Online Library
Plant diversity surely determines arthropod diversity, but only moderate correlations
between arthropod and plant species richness had been observed until Basset et …

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

P Kapli, S Lutteropp, J Zhang, K Kobert… - …, 2017 - academic.oup.com
Motivation In recent years, molecular species delimitation has become a routine approach
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …

Comparison of methods for molecular species delimitation across a range of speciation scenarios

A Luo, C Ling, SYW Ho, CD Zhu - Systematic Biology, 2018 - academic.oup.com
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …

Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy

S Mills, JA Alcántara-Rodríguez, J Ciros-Pérez… - Hydrobiologia, 2017 - Springer
Understanding patterns and processes in biological diversity is a critical task given current
and rapid environmental change. Such knowledge is even more essential when the taxa …

Guidelines for DNA taxonomy, with a focus on the meiofauna

D Fontaneto, JF Flot, CQ Tang - Marine Biodiversity, 2015 - Springer
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …

The hitchhiker's guide to single‐locus species delimitation

S Dellicour, JF Flot - Molecular Ecology Resources, 2018 - Wiley Online Library
Molecular approaches to species delimitation are increasingly used to ascertain the number
of species in a sample prior to taxonomic, ecological or physiological studies. Although …

Species boundaries in plant pathogenic fungi: a Colletotrichum case study

F Liu, M Wang, U Damm, PW Crous, L Cai - BMC Evolutionary Biology, 2016 - Springer
Background Accurate delimitation of plant pathogenic fungi is critical for the establishment of
quarantine regulations, screening for genetic resistance to plant pathogens, and the study of …

Rarity and incomplete sampling in DNA-based species delimitation

D Ahrens, T Fujisawa, HJ Krammer, J Eberle… - Systematic …, 2016 - academic.oup.com
DNA-based species delimitation may be compromised by limited sampling effort and
species rarity, including “singleton” representatives of species, which hampers estimates of …