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Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …
ASAP: assemble species by automatic partitioning
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …
method to build species partitions from single locus sequence alignments (ie, barcode data …
Plant diversity accurately predicts insect diversity in two tropical landscapes
K Zhang, S Lin, Y Ji, C Yang, X Wang, C Yang… - Molecular …, 2016 - Wiley Online Library
Plant diversity surely determines arthropod diversity, but only moderate correlations
between arthropod and plant species richness had been observed until Basset et …
between arthropod and plant species richness had been observed until Basset et …
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
Motivation In recent years, molecular species delimitation has become a routine approach
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …
Comparison of methods for molecular species delimitation across a range of speciation scenarios
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …
various operational criteria. There has been growing use of molecular approaches for …
Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy
Understanding patterns and processes in biological diversity is a critical task given current
and rapid environmental change. Such knowledge is even more essential when the taxa …
and rapid environmental change. Such knowledge is even more essential when the taxa …
Guidelines for DNA taxonomy, with a focus on the meiofauna
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
The hitchhiker's guide to single‐locus species delimitation
Molecular approaches to species delimitation are increasingly used to ascertain the number
of species in a sample prior to taxonomic, ecological or physiological studies. Although …
of species in a sample prior to taxonomic, ecological or physiological studies. Although …
Species boundaries in plant pathogenic fungi: a Colletotrichum case study
Background Accurate delimitation of plant pathogenic fungi is critical for the establishment of
quarantine regulations, screening for genetic resistance to plant pathogens, and the study of …
quarantine regulations, screening for genetic resistance to plant pathogens, and the study of …
Rarity and incomplete sampling in DNA-based species delimitation
DNA-based species delimitation may be compromised by limited sampling effort and
species rarity, including “singleton” representatives of species, which hampers estimates of …
species rarity, including “singleton” representatives of species, which hampers estimates of …