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Multi-omics research in sarcopenia: Current progress and future prospects
Sarcopenia is a systemic disease with progressive and generalized skeletal muscle
dysfunction defined by age-related low muscle mass, high content of muscle slow fibers, and …
dysfunction defined by age-related low muscle mass, high content of muscle slow fibers, and …
Intron retention as a mode for RNA-seq data analysis
Intron retention (IR) is an alternative splicing mode whereby introns, rather than being
spliced out as usual, are retained in mature mRNAs. It was previously considered a …
spliced out as usual, are retained in mature mRNAs. It was previously considered a …
A serpin gene from a parasitoid wasp disrupts host immunity and exhibits adaptive alternative splicing
Alternative splicing (AS) is a major source of protein diversity in eukaryotes, but less is
known about its evolution compared to gene duplication (GD). How AS and GD interact is …
known about its evolution compared to gene duplication (GD). How AS and GD interact is …
Systematic analysis of survival-associated alternative splicing signatures in gastrointestinal pan-adenocarcinomas
P Lin, R He, F Ma, L Liang, Y He, H Yang, Y Dang… - …, 2018 - thelancet.com
Background Gastrointestinal pan-adenocarcinomas, which mainly include
adenocarcinomas of the esophagus, stomach, colon, and rectum, place a heavy burden on …
adenocarcinomas of the esophagus, stomach, colon, and rectum, place a heavy burden on …
Alternative splicing of P2RX7 pre-messenger RNA in health and diseases: Myth or reality?
J Benzaquen, S Heeke, SJ dit Hreich, L Douguet… - biomedical …, 2019 - Elsevier
Alternative splicing (AS) tremendously increases the use of genetic information by
generating protein isoforms that differ in protein–protein interactions, catalytic activity and/or …
generating protein isoforms that differ in protein–protein interactions, catalytic activity and/or …
Computing the role of alternative splicing in cancer
Most human genes undergo alternative splicing (AS), and dysregulation of alternative
splicing contributes to tumor initiation and progression. Computational analysis of genomic …
splicing contributes to tumor initiation and progression. Computational analysis of genomic …
Position-dependent effects of RNA-binding proteins in the context of co-transcriptional splicing
T Horn, A Gosliga, C Li, M Enculescu… - npj Systems Biology and …, 2023 - nature.com
Alternative splicing is an important step in eukaryotic mRNA pre-processing which increases
the complexity of gene expression programs, but is frequently altered in disease. Previous …
the complexity of gene expression programs, but is frequently altered in disease. Previous …
In vivo measurements reveal a single 5′-intron is sufficient to increase protein expression level in Caenorhabditis elegans
MM Crane, B Sands, C Battaglia, B Johnson, S Yun… - Scientific reports, 2019 - nature.com
Introns can increase gene expression levels using a variety of mechanisms collectively
referred to as Intron Mediated Enhancement (IME). IME has been measured in cell culture …
referred to as Intron Mediated Enhancement (IME). IME has been measured in cell culture …
Identification of neoantigens derived from alternative splicing and RNA modification
J Park, YJ Chung - Genomics & informatics, 2019 - pmc.ncbi.nlm.nih.gov
The acquisition of somatic mutations is the most common event in cancer. Neoantigens
expressed from genes with mutations acquired during carcinogenesis can be tumor-specific …
expressed from genes with mutations acquired during carcinogenesis can be tumor-specific …
Maximizing the utility of cancer transcriptomic data
Transcriptomic profiling has been applied to large numbers of cancer samples, by large-
scale consortia, including The Cancer Genome Atlas, International Cancer Genome …
scale consortia, including The Cancer Genome Atlas, International Cancer Genome …