Multi-omics research in sarcopenia: Current progress and future prospects

JC Liu, SS Dong, H Shen, DY Yang, BB Chen… - Ageing Research …, 2022 - Elsevier
Sarcopenia is a systemic disease with progressive and generalized skeletal muscle
dysfunction defined by age-related low muscle mass, high content of muscle slow fibers, and …

Intron retention as a mode for RNA-seq data analysis

JT Zheng, CX Lin, ZY Fang, HD Li - Frontiers in genetics, 2020 - frontiersin.org
Intron retention (IR) is an alternative splicing mode whereby introns, rather than being
spliced out as usual, are retained in mature mRNAs. It was previously considered a …

A serpin gene from a parasitoid wasp disrupts host immunity and exhibits adaptive alternative splicing

Z Yan, Q Fang, J Song, L Yang, S **ao, J Wang… - PLoS …, 2023 - journals.plos.org
Alternative splicing (AS) is a major source of protein diversity in eukaryotes, but less is
known about its evolution compared to gene duplication (GD). How AS and GD interact is …

Systematic analysis of survival-associated alternative splicing signatures in gastrointestinal pan-adenocarcinomas

P Lin, R He, F Ma, L Liang, Y He, H Yang, Y Dang… - …, 2018 - thelancet.com
Background Gastrointestinal pan-adenocarcinomas, which mainly include
adenocarcinomas of the esophagus, stomach, colon, and rectum, place a heavy burden on …

Alternative splicing of P2RX7 pre-messenger RNA in health and diseases: Myth or reality?

J Benzaquen, S Heeke, SJ dit Hreich, L Douguet… - biomedical …, 2019 - Elsevier
Alternative splicing (AS) tremendously increases the use of genetic information by
generating protein isoforms that differ in protein–protein interactions, catalytic activity and/or …

Computing the role of alternative splicing in cancer

Z Liu, R Rabadan - Trends in cancer, 2021 - cell.com
Most human genes undergo alternative splicing (AS), and dysregulation of alternative
splicing contributes to tumor initiation and progression. Computational analysis of genomic …

Position-dependent effects of RNA-binding proteins in the context of co-transcriptional splicing

T Horn, A Gosliga, C Li, M Enculescu… - npj Systems Biology and …, 2023 - nature.com
Alternative splicing is an important step in eukaryotic mRNA pre-processing which increases
the complexity of gene expression programs, but is frequently altered in disease. Previous …

In vivo measurements reveal a single 5′-intron is sufficient to increase protein expression level in Caenorhabditis elegans

MM Crane, B Sands, C Battaglia, B Johnson, S Yun… - Scientific reports, 2019 - nature.com
Introns can increase gene expression levels using a variety of mechanisms collectively
referred to as Intron Mediated Enhancement (IME). IME has been measured in cell culture …

Identification of neoantigens derived from alternative splicing and RNA modification

J Park, YJ Chung - Genomics & informatics, 2019 - pmc.ncbi.nlm.nih.gov
The acquisition of somatic mutations is the most common event in cancer. Neoantigens
expressed from genes with mutations acquired during carcinogenesis can be tumor-specific …

Maximizing the utility of cancer transcriptomic data

Y **ang, Y Ye, Z Zhang, L Han - Trends in cancer, 2018 - cell.com
Transcriptomic profiling has been applied to large numbers of cancer samples, by large-
scale consortia, including The Cancer Genome Atlas, International Cancer Genome …