Evolution of sucrose metabolism: the dichotomy of invertases and beyond

H Wan, L Wu, Y Yang, G Zhou, YL Ruan - Trends in plant science, 2018 - cell.com
In higher plants, invertases hydrolyze sucrose (Suc), the major end product of
photosynthesis, into glucose (Glc) and fructose (Fru), which are used as nutrients, energy …

Evolution of synonymous codon usage in metazoans

L Duret - Current opinion in genetics & development, 2002 - Elsevier
The vast amount of data generated by genome projects and the recent development of
population genetics models make comparative sequence analyses a very powerful …

Gene expression across mammalian organ development

M Cardoso-Moreira, J Halbert, D Valloton, B Velten… - Nature, 2019 - nature.com
The evolution of gene expression in mammalian organ development remains largely
uncharacterized. Here we report the transcriptomes of seven organs (cerebrum, cerebellum …

A benchmark of gene expression tissue-specificity metrics

N Kryuchkova-Mostacci… - Briefings in …, 2017 - academic.oup.com
One of the major properties of genes is their expression pattern. Notably, genes are often
classified as tissue specific or housekee**. This property is of interest to molecular …

Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data

YF Huang, B Gulko, A Siepel - Nature genetics, 2017 - nature.com
Many genetic variants that influence phenotypes of interest are located outside of protein-
coding genes, yet existing methods for identifying such variants have poor predictive power …

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Project management: Fulton Lucinda A. 1 Mardis … - Nature, 2004 - nature.com
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the
chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to …

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

University of Utah Weiss Robert B. 14 Dunn Diane M … - Nature, 2004 - nature.com
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine
and drug development, having made inestimable contributions to human health. We report …

Molecular traces of alternative social organization in a termite genome

N Terrapon, C Li, HM Robertson, L Ji, X Meng… - Nature …, 2014 - nature.com
Although eusociality evolved independently within several orders of insects, research into
the molecular underpinnings of the transition towards social complexity has been confined …

[HTML][HTML] Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution

DA Drummond, CO Wilke - Cell, 2008 - cell.com
Strikingly consistent correlations between rates of coding-sequence evolution and gene
expression levels are apparent across taxa, but the biological causes behind the selective …

Four evolutionary strata on the human X chromosome

BT Lahn, DC Page - Science, 1999 - science.org
Human sex chromosomes evolved from autosomes. Nineteen ancestral autosomal genes
persist as differentiated homologs on the X and Y chromosomes. The ages of individual XY …