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Cell Painting: a decade of discovery and innovation in cellular imaging
Modern quantitative image analysis techniques have enabled high-throughput, high-content
imaging experiments. Image-based profiling leverages the rich information in images to …
imaging experiments. Image-based profiling leverages the rich information in images to …
Learning representations for image-based profiling of perturbations
Measuring the phenotypic effect of treatments on cells through imaging assays is an efficient
and powerful way of studying cell biology, and requires computational methods for …
and powerful way of studying cell biology, and requires computational methods for …
Evaluating batch correction methods for image-based cell profiling
High-throughput image-based profiling platforms are powerful technologies capable of
collecting data from billions of cells exposed to thousands of perturbations in a time-and cost …
collecting data from billions of cells exposed to thousands of perturbations in a time-and cost …
Morphological profiling for drug discovery in the era of deep learning
Morphological profiling is a valuable tool in phenotypic drug discovery. The advent of high-
throughput automated imaging has enabled the capturing of a wide range of morphological …
throughput automated imaging has enabled the capturing of a wide range of morphological …
JUMP Cell Painting dataset: morphological impact of 136,000 chemical and genetic perturbations
Image-based profiling has emerged as a powerful technology for various steps in basic
biological and pharmaceutical discovery, but the community has lacked a large, public …
biological and pharmaceutical discovery, but the community has lacked a large, public …
Cell Painting Gallery: an open resource for image-based profiling
Image-based or morphological profiling is a rapidly expanding field wherein cells are
'profiled'by extracting hundreds to thousands of unbiased, quantitative features from images …
'profiled'by extracting hundreds to thousands of unbiased, quantitative features from images …
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations
The identification of genetic and chemical perturbations with similar impacts on cell
morphology can elucidate compounds' mechanisms of action or novel regulators of genetic …
morphology can elucidate compounds' mechanisms of action or novel regulators of genetic …
High-dimensional phenoty** to define the genetic basis of cellular morphology
The morphology of cells is dynamic and mediated by genetic and environmental factors.
Characterizing how genetic variation impacts cell morphology can provide an important link …
Characterizing how genetic variation impacts cell morphology can provide an important link …
Self-supervision advances morphological profiling by unlocking powerful image representations
Cell Painting is an image-based assay that offers valuable insights into drug mechanisms of
action and off-target effects. However, traditional feature extraction tools such as CellProfiler …
action and off-target effects. However, traditional feature extraction tools such as CellProfiler …
Predicting the mitochondrial toxicity of small molecules: insights from mechanistic assays and cell painting data
Mitochondrial toxicity is a significant concern in the drug discovery process, as compounds
that disrupt the function of these organelles can lead to serious side effects, including liver …
that disrupt the function of these organelles can lead to serious side effects, including liver …