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Impact of antibiotic pollution on the bacterial population within surface water with special focus on mountain rivers
K Kulik, A Lenart-Boroń, K Wyrzykowska - Water, 2023 - mdpi.com
Environmental aquatic pollution with antibiotics is a global challenge that affects even
pristine mountain environments. Monitoring the concentration of antibiotics in water is critical …
pristine mountain environments. Monitoring the concentration of antibiotics in water is critical …
[HTML][HTML] Food waste composting and microbial community structure profiling
K Palaniveloo, MA Amran, NA Norhashim… - Processes, 2020 - mdpi.com
Over the last decade, food waste has been one of the major issues globally as it brings a
negative impact on the environment and health. Rotting discharges methane, causing …
negative impact on the environment and health. Rotting discharges methane, causing …
Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing
S Takahashi, J Tomita, K Nishioka, T Hisada… - PloS one, 2014 - journals.plos.org
For the analysis of microbial community structure based on 16S rDNA sequence diversity,
sensitive and robust PCR amplification of 16S rDNA is a critical step. To obtain accurate …
sensitive and robust PCR amplification of 16S rDNA is a critical step. To obtain accurate …
Comparative evaluation of four bacteria-specific primer pairs for 16S rRNA gene surveys
Bacterial taxonomic community analyses using PCR-amplification of the 16S rRNA gene
and high-throughput sequencing has become a cornerstone in microbiology research. To …
and high-throughput sequencing has become a cornerstone in microbiology research. To …
Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing
Modern metagenomic environmental DNA studies are almost completely reliant on next-
generation sequencing, making evaluations of these methods critical. We compare two next …
generation sequencing, making evaluations of these methods critical. We compare two next …
Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities
Water quality is an emergent property of a complex system comprised of interacting
microbial populations and introduced microbial and chemical contaminants. Studies …
microbial populations and introduced microbial and chemical contaminants. Studies …
Role of environmental factors and microorganisms in determining the fate of polycyclic aromatic hydrocarbons in the marine environment
R Duran, C Cravo-Laureau - FEMS Microbiology Reviews, 2016 - academic.oup.com
Polycyclic aromatic hydrocarbons (PAHs) are widespread in marine ecosystems and
originate from natural sources and anthropogenic activities. PAHs enter the marine …
originate from natural sources and anthropogenic activities. PAHs enter the marine …
Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling
High-throughput sequencing of the taxonomically informative 16S rRNA gene provides a
powerful approach for exploring microbial diversity. Here we compare the performances of …
powerful approach for exploring microbial diversity. Here we compare the performances of …
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
Conventional assessments of ecosystem sample composition are based on morphology-
based or DNA barcode identification of individuals. Both approaches are costly and time …
based or DNA barcode identification of individuals. Both approaches are costly and time …