Impact of antibiotic pollution on the bacterial population within surface water with special focus on mountain rivers

K Kulik, A Lenart-Boroń, K Wyrzykowska - Water, 2023 - mdpi.com
Environmental aquatic pollution with antibiotics is a global challenge that affects even
pristine mountain environments. Monitoring the concentration of antibiotics in water is critical …

[HTML][HTML] Food waste composting and microbial community structure profiling

K Palaniveloo, MA Amran, NA Norhashim… - Processes, 2020 - mdpi.com
Over the last decade, food waste has been one of the major issues globally as it brings a
negative impact on the environment and health. Rotting discharges methane, causing …

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

S Takahashi, J Tomita, K Nishioka, T Hisada… - PloS one, 2014 - journals.plos.org
For the analysis of microbial community structure based on 16S rDNA sequence diversity,
sensitive and robust PCR amplification of 16S rDNA is a critical step. To obtain accurate …

Comparative evaluation of four bacteria-specific primer pairs for 16S rRNA gene surveys

S Thijs, M Op De Beeck, B Beckers, S Truyens… - Frontiers in …, 2017 - frontiersin.org
Bacterial taxonomic community analyses using PCR-amplification of the 16S rRNA gene
and high-throughput sequencing has become a cornerstone in microbiology research. To …

Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing

M Tessler, JS Neumann, E Afshinnekoo, M Pineda… - Scientific reports, 2017 - nature.com
Modern metagenomic environmental DNA studies are almost completely reliant on next-
generation sequencing, making evaluations of these methods critical. We compare two next …

Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

BF Tan, C Ng, JP Nshimyimana, LL Loh… - Frontiers in …, 2015 - frontiersin.org
Water quality is an emergent property of a complex system comprised of interacting
microbial populations and introduced microbial and chemical contaminants. Studies …

Role of environmental factors and microorganisms in determining the fate of polycyclic aromatic hydrocarbons in the marine environment

R Duran, C Cravo-Laureau - FEMS Microbiology Reviews, 2016 - academic.oup.com
Polycyclic aromatic hydrocarbons (PAHs) are widespread in marine ecosystems and
originate from natural sources and anthropogenic activities. PAHs enter the marine …

Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling

SJ Salipante, T Kawashima, C Rosenthal… - Applied and …, 2014 - journals.asm.org
High-throughput sequencing of the taxonomically informative 16S rRNA gene provides a
powerful approach for exploring microbial diversity. Here we compare the performances of …

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

G Lear, I Dickie, J Banks, S Boyer, HL Buckley… - New Zealand Journal of …, 2018 - JSTOR
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

J Gibson, S Shokralla, TM Porter, I King… - Proceedings of the …, 2014 - pnas.org
Conventional assessments of ecosystem sample composition are based on morphology-
based or DNA barcode identification of individuals. Both approaches are costly and time …