The online Tabloid Proteome: an annotated database of protein associations

S Gupta, D Turan, J Tavernier… - Nucleic acids research, 2018 - academic.oup.com
A complete knowledge of the proteome can only be attained by determining the associations
between proteins, along with the nature of these associations (eg physical contact in protein …

CoExpresso: assess the quantitative behavior of protein complexes in human cells

MH Chalabi, V Tsiamis, L Käll, F Vandin… - BMC …, 2019 - Springer
Background Translational and post-translational control mechanisms in the cell result in
widely observable differences between measured gene transcription and protein …

OpenMS and KNIME for Mass Spectrometry Data Processing

O Alka, T Sachsenberg, L Bichmann, J Pfeuffer… - 2020 - books.rsc.org
Computational mass spectrometry has seen exponential growth in recent years in data size
and complexity, straining the existing infrastructure of many labs as they moved towards …

[PDF][PDF] 3.10 Collaboration in a Test of Time Project

GE Marai - Visualization of Biological Data–From Analysis to …, 2022 - d-nb.info
RuleBender is an open-source system for the integrated visualization, modeling and
simulation of rule-based intracellular biochemistry. RuleBender has been remarkably stable …

Quantitative behavior of protein complexes in human cells

MH Chalabi, V Tsiamis, L Käll, F Vandin, V Schwämmle - bioRxiv, 2018 - biorxiv.org
Translational and post-translational control mechanisms in the cell result in widely
observable differences between measured gene transcription and protein abundances …