[HTML][HTML] Reconstruction of ancient microbial genomes from the human gut

MC Wibowo, Z Yang, M Borry, A Hübner, KD Huang… - Nature, 2021 - nature.com
Loss of gut microbial diversity,,,,–in industrial populations is associated with chronic
diseases, underscoring the importance of studying our ancestral gut microbiome. However …

Progress in forensic bone DNA analysis: Lessons learned from ancient DNA

M Hofreiter, J Sneberger, M Pospisek… - Forensic Science …, 2021 - Elsevier
Research on ancient and forensic DNA is related in many ways, and the two fields must deal
with similar obstacles. Therefore, communication between these two communities has the …

Paleomicrobiology: diagnosis and evolution of ancient pathogens

KI Bos, D Kühnert, A Herbig… - Annual Review of …, 2019 - annualreviews.org
The last century has witnessed progress in the study of ancient infectious disease from
purely medical descriptions of past ailments to dynamic interpretations of past population …

Ten millennia of hepatitis B virus evolution

A Kocher, L Papac, R Barquera, FM Key, MA Spyrou… - Science, 2021 - science.org
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health
problem, but its past diversity and dispersal routes are largely unknown. We generated HBV …

[HTML][HTML] A dynamic 6,000-year genetic history of Eurasia's Eastern Steppe

C Jeong, K Wang, S Wilkin, WTT Taylor, BK Miller… - Cell, 2020 - cell.com
Summary The Eastern Eurasian Steppe was home to historic empires of nomadic
pastoralists, including the **ongnu and the Mongols. However, little is known about the …

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage

IM Velsko, JA Fellows Yates, F Aron, RW Hagan… - Microbiome, 2019 - Springer
Background Dental calculus, calcified oral plaque biofilm, contains microbial and host
biomolecules that can be used to study historic microbiome communities and host …

Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain

AS Gancz, AG Farrer, MP Nixon, S Wright… - Nature …, 2023 - nature.com
The prevalence of chronic, non-communicable diseases has risen sharply in recent
decades, especially in industrialized countries. While several studies implicate the …

Tracking the transition to agriculture in Southern Europe through ancient DNA analysis of dental calculus

C Ottoni, D Borić, O Cheronet… - Proceedings of the …, 2021 - National Acad Sciences
Archaeological dental calculus, or mineralized plaque, is a key tool to track the evolution of
oral microbiota across time in response to processes that impacted our culture and biology …

HOPS: automated detection and authentication of pathogen DNA in archaeological remains

R Hübler, FM Key, C Warinner, KI Bos, J Krause… - Genome Biology, 2019 - Springer
High-throughput DNA sequencing enables large-scale metagenomic analyses of complex
biological systems. Such analyses are not restricted to present-day samples and can also be …

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

L Granehäll, KD Huang, A Tett, P Manghi, A Paladin… - Microbiome, 2021 - Springer
Background Dental calculus (mineralised dental plaque) preserves many types of
microfossils and biomolecules, including microbial and host DNA, and ancient calculus are …