Host specificity of the gut microbiome
Develo** general principles of host–microorganism interactions necessitates a robust
understanding of the eco-evolutionary processes that structure microbiota. Phylosymbiosis …
understanding of the eco-evolutionary processes that structure microbiota. Phylosymbiosis …
An introduction to phylosymbiosis
Phylosymbiosis was recently formulated to support a hypothesis-driven framework for the
characterization of a new, cross-system trend in host-associated microbiomes. Defining …
characterization of a new, cross-system trend in host-associated microbiomes. Defining …
ggtreeExtra: compact visualization of richly annotated phylogenetic data
S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou… - Molecular biology …, 2021 - academic.oup.com
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
Applying the core microbiome to understand host–microbe systems
A Risely - Journal of Animal Ecology, 2020 - Wiley Online Library
The host‐associated core microbiome was originally coined to refer to common groups of
microbes or genes that were likely to be particularly important for host biological function …
microbes or genes that were likely to be particularly important for host biological function …
Diversity and functional landscapes in the microbiota of animals in the wild
Animals in the wild are able to subsist on pathogen-infected and poisonous food and show
immunity to various diseases. These may be due to their microbiota, yet we have a poor …
immunity to various diseases. These may be due to their microbiota, yet we have a poor …
Avian gut microbiomes taking flight
Birds harbor complex gut bacterial communities that may sustain their ecologies and
facilitate their biological roles, distribution, and diversity. Research on gut microbiomes in …
facilitate their biological roles, distribution, and diversity. Research on gut microbiomes in …
Factors sha** the abundance and diversity of the gut archaeome across the animal kingdom
Archaea are common constituents of the gut microbiome of humans, ruminants, and termites
but little is known about their diversity and abundance in other animals. Here, we analyse …
but little is known about their diversity and abundance in other animals. Here, we analyse …
Roles of the gut microbiota in the adaptive evolution of mammalian species
AH Moeller, JG Sanders - Philosophical Transactions of …, 2020 - royalsocietypublishing.org
Every mammalian species harbours a gut microbiota, and variation in the gut microbiota
within mammalian species can have profound effects on host phenotypes. In this review, we …
within mammalian species can have profound effects on host phenotypes. In this review, we …
Disentangling host–microbiota complexity through hologenomics
Research on animal–microbiota interactions has become a central topic in biological
sciences because of its relevance to basic eco-evolutionary processes and applied …
sciences because of its relevance to basic eco-evolutionary processes and applied …
Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species
Fish are the most diverse and widely distributed vertebrates, yet little is known about the
microbial ecology of fishes nor the biological and environmental factors that influence fish …
microbial ecology of fishes nor the biological and environmental factors that influence fish …