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Intergenerational and transgenerational epigenetic inheritance in animals
Animals transmit not only DNA but also other molecules, such as RNA, proteins and
metabolites, to their progeny via gametes. It is currently unclear to what extent these …
metabolites, to their progeny via gametes. It is currently unclear to what extent these …
Toward better understanding of artifacts in variant calling from high-coverage samples
H Li - Bioinformatics, 2014 - academic.oup.com
Motivation: Whole-genome high-coverage sequencing has been widely used for personal
and cancer genomics as well as in various research areas. However, in the lack of an …
and cancer genomics as well as in various research areas. However, in the lack of an …
Evolution of the germline mutation rate across vertebrates
LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …
parameter itself. However, little is known about what determines its evolution, as most …
Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition
Population size history is essential for studying human evolution. However, ancient
population size history during the Pleistocene is notoriously difficult to unravel. In this study …
population size history during the Pleistocene is notoriously difficult to unravel. In this study …
The contributions of rare inherited and polygenic risk to ASD in multiplex families
M Cirnigliaro, TS Chang, SA Arteaga… - Proceedings of the …, 2023 - pnas.org
Autism spectrum disorder (ASD) has a complex genetic architecture involving contributions
from both de novo and inherited variation. Few studies have been designed to address the …
from both de novo and inherited variation. Few studies have been designed to address the …
An open resource for accurately benchmarking small variant and reference calls
Benchmark small variant calls are required for develo**, optimizing and assessing the
performance of sequencing and bioinformatics methods. Here, as part of the Genome in a …
performance of sequencing and bioinformatics methods. Here, as part of the Genome in a …
Inherited and de novo genetic risk for autism impacts shared networks
We performed a comprehensive assessment of rare inherited variation in autism spectrum
disorder (ASD) by analyzing whole-genome sequences of 2,308 individuals from families …
disorder (ASD) by analyzing whole-genome sequences of 2,308 individuals from families …
Clock-like mutational processes in human somatic cells
During the course of a lifetime, somatic cells acquire mutations. Different mutational
processes may contribute to the mutations accumulated in a cell, with each imprinting a …
processes may contribute to the mutations accumulated in a cell, with each imprinting a …
Timing, rates and spectra of human germline mutation
R Rahbari, A Wuster, SJ Lindsay, RJ Hardwick… - Nature …, 2016 - nature.com
Germline mutations are a driving force behind genome evolution and genetic disease. We
investigated genome-wide mutation rates and spectra in multi-sibling families. The mutation …
investigated genome-wide mutation rates and spectra in multi-sibling families. The mutation …
Characterizing mutagenic effects of recombination through a sequence-level genetic map
INTRODUCTION Diversity in the sequence of the human genome, arising from
recombinations and mutations, is fundamental to human evolution and human diversity …
recombinations and mutations, is fundamental to human evolution and human diversity …