Intergenerational and transgenerational epigenetic inheritance in animals

MF Perez, B Lehner - Nature cell biology, 2019 - nature.com
Animals transmit not only DNA but also other molecules, such as RNA, proteins and
metabolites, to their progeny via gametes. It is currently unclear to what extent these …

Toward better understanding of artifacts in variant calling from high-coverage samples

H Li - Bioinformatics, 2014 - academic.oup.com
Motivation: Whole-genome high-coverage sequencing has been widely used for personal
and cancer genomics as well as in various research areas. However, in the lack of an …

Evolution of the germline mutation rate across vertebrates

LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …

Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition

W Hu, Z Hao, P Du, F Di Vincenzo, G Manzi, J Cui… - Science, 2023 - science.org
Population size history is essential for studying human evolution. However, ancient
population size history during the Pleistocene is notoriously difficult to unravel. In this study …

The contributions of rare inherited and polygenic risk to ASD in multiplex families

M Cirnigliaro, TS Chang, SA Arteaga… - Proceedings of the …, 2023 - pnas.org
Autism spectrum disorder (ASD) has a complex genetic architecture involving contributions
from both de novo and inherited variation. Few studies have been designed to address the …

An open resource for accurately benchmarking small variant and reference calls

JM Zook, J McDaniel, ND Olson, J Wagner… - Nature …, 2019 - nature.com
Benchmark small variant calls are required for develo**, optimizing and assessing the
performance of sequencing and bioinformatics methods. Here, as part of the Genome in a …

Inherited and de novo genetic risk for autism impacts shared networks

EK Ruzzo, L Pérez-Cano, JY Jung, L Wang… - Cell, 2019 - cell.com
We performed a comprehensive assessment of rare inherited variation in autism spectrum
disorder (ASD) by analyzing whole-genome sequences of 2,308 individuals from families …

Clock-like mutational processes in human somatic cells

LB Alexandrov, PH Jones, DC Wedge, JE Sale… - Nature …, 2015 - nature.com
During the course of a lifetime, somatic cells acquire mutations. Different mutational
processes may contribute to the mutations accumulated in a cell, with each imprinting a …

Timing, rates and spectra of human germline mutation

R Rahbari, A Wuster, SJ Lindsay, RJ Hardwick… - Nature …, 2016 - nature.com
Germline mutations are a driving force behind genome evolution and genetic disease. We
investigated genome-wide mutation rates and spectra in multi-sibling families. The mutation …

Characterizing mutagenic effects of recombination through a sequence-level genetic map

BV Halldorsson, G Palsson, OA Stefansson, H Jonsson… - Science, 2019 - science.org
INTRODUCTION Diversity in the sequence of the human genome, arising from
recombinations and mutations, is fundamental to human evolution and human diversity …