Dealing with missing values in large-scale studies: microarray data imputation and beyond

T Aittokallio - Briefings in bioinformatics, 2010 - academic.oup.com
High-throughput biotechnologies, such as gene expression microarrays or mass-
spectrometry-based proteomic assays, suffer from frequent missing values due to various …

Robust methods for multivariate data analysis

SF Møller, J von Frese, R Bro - Journal of Chemometrics: A …, 2005 - Wiley Online Library
Outliers may hamper proper classical multivariate analysis, and lead to incorrect
conclusions. To remedy the problem of outliers, robust methods are developed in statistics …

The history of the cluster heat map

L Wilkinson, M Friendly - The American Statistician, 2009 - Taylor & Francis
The cluster heat map is an ingenious display that simultaneously reveals row and column
hierarchical cluster structure in a data matrix. It consists of a rectangular tiling, with each tile …

Matrix reordering methods for table and network visualization

M Behrisch, B Bach, N Henry Riche… - Computer Graphics …, 2016 - Wiley Online Library
This survey provides a description of algorithms to reorder visual matrices of tabular data
and adjacency matrix of Networks. The goal of this survey is to provide a comprehensive list …

Clustering cancer gene expression data: a comparative study

MCP De Souto, IG Costa, DS De Araujo, TB Ludermir… - BMC …, 2008 - Springer
Background The use of clustering methods for the discovery of cancer subtypes has drawn a
great deal of attention in the scientific community. While bioinformaticians have proposed …

Comparison of Affymetrix GeneChip expression measures

RA Irizarry, Z Wu, HA Jaffee - Bioinformatics, 2006 - academic.oup.com
Abstract Motivation: In the Affymetrix GeneChip system, preprocessing occurs before one
obtains expression level measurements. Because the number of competing preprocessing …

A data-driven koopman approach for power system nonlinear dynamic observability analysis

Y Xu, Q Wang, L Mili, Z Zheng, W Gu… - IEEE Transactions on …, 2023 - ieeexplore.ieee.org
A prerequisite to dynamic state estimation of a stochastic nonlinear dynamic model of a
power system is its observability analysis. However, due to the model nonlinearity, the …

Propagation of outliers in multivariate data

F Alqallaf, S Van Aelst, VJ Yohai, RH Zamar - The Annals of Statistics, 2009 - JSTOR
We investigate the performance of robust estimates of multivariate location under
nonstandard data contamination models such as componentwise outliers (ie, contamination …

[HTML][HTML] Large covariance estimation through elliptical factor models

J Fan, H Liu, W Wang - Annals of statistics, 2018 - ncbi.nlm.nih.gov
We propose a general Principal Orthogonal complEment Thresholding (POET) framework
for large-scale covariance matrix estimation based on the approximate factor model. A set of …

[書籍][B] Analysis of microarray gene expression data

MLT Lee - 2007 - books.google.com
After genomic sequencing, microarray technology has emerged as a widely used platform
for genomic studies in the life sciences. Microarray technology provides a systematic way to …