With the development of molecular marker technology in the 1980s, the fate of plant
breeding has changed. Different types of molecular markers have been developed and …

Although genoty** errors affect most data and can markedly influence the biological
conclusions of a study, they are too often neglected. Errors have various causes, but their …

The ability to efficiently and accurately determine genotypes is a keystone technology in
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …

Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …

Advances in sequencing technology provide special opportunities for genoty** individuals
with speed and thrift, but the lack of software to automate the calling of tens of thousands of …

Complete and accurate reference genomes and annotations provide fundamental resources
for functional genomics and crop breeding. Here we report a de novo assembly and …

Motivation: Expression quantitative trait loci (eQTL) analysis links variations in gene
expression levels to genotypes. For modern datasets, eQTL analysis is a computationally …

Mitochondrial stress activates a mitonuclear response to safeguard and repair mitochondrial
function and to adapt cellular metabolism to stress. Using a multiomics approach in …

Female Aedes aegypti mosquitoes infect more than 400 million people each year with
dangerous viral pathogens including dengue, yellow fever, Zika and chikungunya. Progress …

Harnessing genetic diversity in major staple crops through the development of new breeding
capabilities is essential to ensure food security. Here we examined the genetic and …