Thirty years of resistance: Zig-zag through the plant immune system

BPM Ngou, P Ding, JDG Jones - The Plant Cell, 2022 - academic.oup.com
Understanding the plant immune system is crucial for using genetics to protect crops from
diseases. Plants resist pathogens via a two-tiered innate immune detection-and-response …

Diversification, adaptation, and community assembly of the American oaks (Quercus), a model clade for integrating ecology and evolution

J Cavender‐Bares - New Phytologist, 2019 - Wiley Online Library
Contents Summary 669 I. Model clades for the study and integration of ecology and
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q **a, Z Liang, X Dong, K Margaryan… - Science, 2023 - science.org
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

BUSCO: assessing genome assembly and annotation completeness

M Seppey, M Manni, EM Zdobnov - Gene prediction: methods and …, 2019 - Springer
Genomics drives the current progress in molecular biology, generating unprecedented
volumes of data. The scientific value of these sequences depends on the ability to evaluate …

Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages

T Zhang, W Huang, L Zhang, DZ Li, J Qi… - Nature communications, 2024 - nature.com
Poaceae members shared a whole-genome duplication called rho. However, little is known
about the evolutionary pattern of the rho-derived duplicates among Poaceae lineages and …

Genomic landscape of the global oak phylogeny

AL Hipp, PS Manos, M Hahn, M Avishai… - New …, 2020 - Wiley Online Library
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

Genome-wide analyses of introgression between two sympatric Asian oak species

R Fu, Y Zhu, Y Liu, Y Feng, RS Lu, Y Li, P Li… - Nature Ecology & …, 2022 - nature.com
Introgression can be an important source of new alleles for adaption under rapidly changing
environments, perhaps even more important than standing variation. Though introgression …

The genome evolution and domestication of tropical fruit mango

P Wang, Y Luo, J Huang, S Gao, G Zhu, Z Dang, J Gai… - Genome biology, 2020 - Springer
Background Mango is one of the world's most important tropical fruits. It belongs to the family
Anacardiaceae, which includes several other economically important species, notably …

Oaks: an evolutionary success story

A Kremer, AL Hipp - New Phytologist, 2020 - Wiley Online Library
The genus Quercus is among the most widespread and species‐rich tree genera in the
northern hemisphere. The extraordinary species diversity in America and Asia together with …