Complexity of the alternative splicing landscape in plants

ASN Reddy, Y Marquez, M Kalyna, A Barta - The Plant Cell, 2013 - academic.oup.com
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …

Effects of abiotic stress on plants: a systems biology perspective

GR Cramer, K Urano, S Delrot, M Pezzotti… - BMC plant biology, 2011 - Springer
The natural environment for plants is composed of a complex set of abiotic stresses and
biotic stresses. Plant responses to these stresses are equally complex. Systems biology …

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

CPG Calixto, W Guo, AB James, NA Tzioutziou… - The Plant …, 2018 - academic.oup.com
Plants have adapted to tolerate and survive constantly changing environmental conditions
by reprogramming gene expression The dynamics of the contribution of alternative splicing …

[HTML][HTML] Alternative splicing in plants–coming of age

NH Syed, M Kalyna, Y Marquez, A Barta… - Trends in plant …, 2012 - cell.com
More than 60% of intron-containing genes undergo alternative splicing (AS) in plants. This
number will increase when AS in different tissues, developmental stages, and environmental …

Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks

S Reiland, G Messerli, K Baerenfaller, B Gerrits… - Plant …, 2009 - academic.oup.com
We have characterized the phosphoproteome of Arabidopsis (Arabidopsis thaliana)
seedlings using high-accuracy mass spectrometry and report the identification of 1,429 …

Alternative splicing of pre-messenger RNAs in plants in the genomic era

ASN Reddy - Annu. Rev. Plant Biol., 2007 - annualreviews.org
Primary transcripts (precursor-mRNAs) with introns can undergo alternative splicing to
produce multiple transcripts from a single gene by differential use of splice sites, thereby …

PhosPhAt : a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

JL Heazlewood, P Durek, J Hummel… - Nucleic acids …, 2007 - academic.oup.com
The PhosPhAt database provides a resource consolidating our current knowledge of mass
spectrometry-based identified phosphorylation sites in Arabidopsis and combines it with …

Large‐scale phosphorylation map** reveals the extent of tyrosine phosphorylation in Arabidopsis

N Sugiyama, H Nakagami, K Mochida… - Molecular systems …, 2008 - embopress.org
Protein phosphorylation regulates a wide range of cellular processes. Here, we report the
proteome‐wide map** of in vivo phosphorylation sites in Arabidopsis by using …

Abiotic stress response in plants: when post-transcriptional and post-translational regulations control transcription

E Mazzucotelli, AM Mastrangelo, C Crosatti, D Guerra… - Plant Science, 2008 - Elsevier
The molecular response of plants to abiotic stresses has been often considered as a
complex process mainly based on the modulation of transcriptional activity of stress-related …

Feeling the heat: searching for plant thermosensors

L Dai Vu, K Gevaert, I De Smet - Trends in plant science, 2019 - cell.com
To draw the complete picture of plant thermal signaling, it is important to find the missing
links between the temperature cue, the actual sensing, and the subsequent response. In this …